View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320_low_79 (Length: 242)

Name: NF1320_low_79
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320_low_79
NF1320_low_79
[»] chr8 (2 HSPs)
chr8 (1-159)||(11403070-11403228)
chr8 (58-153)||(11402167-11402262)
[»] chr4 (3 HSPs)
chr4 (20-153)||(45965981-45966114)
chr4 (55-153)||(27730443-27730541)
chr4 (59-159)||(24146715-24146815)
[»] chr6 (1 HSPs)
chr6 (55-153)||(29303714-29303812)
[»] chr5 (3 HSPs)
chr5 (55-153)||(12529230-12529328)
chr5 (55-153)||(35841694-35841792)
chr5 (62-154)||(12643685-12643777)
[»] chr2 (2 HSPs)
chr2 (55-153)||(42913343-42913441)
chr2 (20-153)||(42300567-42300700)
[»] chr1 (1 HSPs)
chr1 (55-153)||(29282484-29282582)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 11403070 - 11403228
Alignment:
Q  1 tgactttcgatacatcctttgcaactctgctaataacaagatatcgatattggaggactccattatcgtagtcaccacatgaccaaacttcatcgacata 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11403070 tgactttcgatacatcctttgcgactctgctaataacaagatattgatattggaggactccattatcgtagtcaccacatgaccaaactttatcgacata 11403169  T
Q  101 gtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacaccgtcat 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11403170 gtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacaccgtcat 11403228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 11402262 - 11402167
Alignment:
Q  58 ctccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 153  Q
    ||||||||||||||||||||||||| |||  |||||| ||||| |   |||| ||||||||||||||||| |||||  ||||| ||||||||||||    
T  11402262 ctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacac 11402167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 45966114 - 45965981
Alignment:
Q  20 tgcaactctgctaataacaagatatcgatattggaggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaattttctcca 119  Q
    |||||||||||||   ||||| |||||||||    |||||||| ||||||||||||||||||| || | ||||||| ||| ||| |||||||||||||||    
T  45966114 tgcaactctgctaccgacaaggtatcgatatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctcca 45966015  T
Q  120 ccaccttgctatccggaatatcttctccatacac 153  Q
    |||||||||||||  |||||||||||||||||||    
T  45966014 ccaccttgctatcttgaatatcttctccatacac 45965981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 27730443 - 27730541
Alignment:
Q  55 ggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 153  Q
    |||||||| ||||||||||||||||||| || | ||||||| ||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  27730443 ggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacac 27730541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 24146815 - 24146715
Alignment:
Q  59 tccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacaccgtca 158  Q
    |||| ||| ||||||||||||||| || | ||||||| ||| ||| ||| |||||||||||| ||||||||||| ||||||||||||||||||||| |||    
T  24146815 tccaatattgtagtcaccacatgatcatatttcatcggcatggtgcgtaaaattttctccactaccttgctatctggaatatcttctccatacaccctca 24146716  T
Q  159 t 159  Q
    |    
T  24146715 t 24146715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 29303812 - 29303714
Alignment:
Q  55 ggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 153  Q
    |||||||| ||||||||||||||||||| || | ||||||| ||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  29303812 ggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacac 29303714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 12529230 - 12529328
Alignment:
Q  55 ggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 153  Q
    |||||||| ||||||||||||||||||| || | ||||||| ||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  12529230 ggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacac 12529328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 35841792 - 35841694
Alignment:
Q  55 ggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 153  Q
    |||||||| |||| |||||||||||||| || | ||||||| ||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  35841792 ggactccaatatcatagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacac 35841694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 12643777 - 12643685
Alignment:
Q  62 attatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacacc 154  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| ||| ||| | ||||||||| |||| |||||    
T  12643777 attattgtagtcaccacatgatcaaacttcatcggcatagtgtgtagaattttctctaccactttgttattcagaatatcttttccacacacc 12643685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 42913343 - 42913441
Alignment:
Q  55 ggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 153  Q
    |||||||| ||||||||||||||||||| || | ||||||| ||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  42913343 ggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacac 42913441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 42300700 - 42300567
Alignment:
Q  20 tgcaactctgctaataacaagatatcgatattggaggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaattttctcca 119  Q
    |||||||||||||   ||||| ||||| ||| |  |||||||| ||||||||||||||||||| || | ||||||| ||| |||  ||||||||||||||    
T  42300700 tgcaactctgctaccgacaaggtatcggtatcgtgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcatagaattttctcca 42300601  T
Q  120 ccaccttgctatccggaatatcttctccatacac 153  Q
    |||||||||||||  |||||||||||||||||||    
T  42300600 ccaccttgctatcttgaatatcttctccatacac 42300567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 29282484 - 29282582
Alignment:
Q  55 ggactccattatcgtagtcaccacatgaccaaacttcatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 153  Q
    |||||||| ||||||||||||||||||| || | ||||||| ||| ||| ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  29282484 ggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccatacac 29282582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University