View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320_low_80 (Length: 242)

Name: NF1320_low_80
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320_low_80
NF1320_low_80
[»] chr8 (2 HSPs)
chr8 (4-145)||(11402949-11403091)
chr8 (27-97)||(11402306-11402376)
[»] chr6 (1 HSPs)
chr6 (34-109)||(29303875-29303950)
[»] chr5 (2 HSPs)
chr5 (34-109)||(35841855-35841930)
chr5 (34-109)||(12529092-12529167)
[»] chr4 (3 HSPs)
chr4 (34-109)||(45966142-45966217)
chr4 (34-109)||(27730305-27730380)
chr4 (34-93)||(24146874-24146933)
[»] chr2 (2 HSPs)
chr2 (34-109)||(42913205-42913280)
chr2 (27-109)||(42300721-42300803)
[»] chr1 (1 HSPs)
chr1 (34-109)||(29282346-29282421)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 11403091 - 11402949
Alignment:
Q  4 gcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgc 102  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11403091 gcaaaggatgtatcgaaagtcatgtcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgc 11402992  T
Q  103 tgaatccggttagaagggagagagtaaaggtcgtgataatttc 145  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11402991 tgaatccggttagaagggagagagtaaaggtcgtgataatttc 11402949  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 11402306 - 11402376
Alignment:
Q  27 tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataac 97  Q
    |||||| ||||||| ||||||| || |||| ||||||||||||| ||||||| || |||||| ||||||||    
T  11402306 tcaacagaatattgcagaagacagagaaagcaaaggaggaagccttgaaaagtcaagtgaacttcaataac 11402376  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 29303875 - 29303950
Alignment:
Q  34 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatcc 109  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  29303875 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatcc 29303950  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 35841855 - 35841930
Alignment:
Q  34 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatcc 109  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  35841855 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatcc 35841930  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 12529167 - 12529092
Alignment:
Q  34 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatcc 109  Q
    |||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  12529167 aatattggagaatactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatcc 12529092  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 45966142 - 45966217
Alignment:
Q  34 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatcc 109  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  45966142 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatcc 45966217  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 27730380 - 27730305
Alignment:
Q  34 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatcc 109  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  27730380 aatattggaaaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatcc 27730305  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 24146874 - 24146933
Alignment:
Q  34 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaa 93  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  24146874 aatattggataagactgaaaaagtaaaggaggaagccttgaagagccaggtgaagctcaa 24146933  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 42913280 - 42913205
Alignment:
Q  34 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatcc 109  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  42913280 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatcc 42913205  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 42300721 - 42300803
Alignment:
Q  27 tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatcc 109  Q
    |||||| |||||||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||| ||| ||| |||||||    
T  42300721 tcaacagaatattggagaagagtgaaaatgtaaaggaggaagccttgaagagccaggtgaacctcaacaacattgttgaatcc 42300803  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 29282421 - 29282346
Alignment:
Q  34 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatcc 109  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  29282421 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatcc 29282346  T

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