View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_81 (Length: 215)
Name: NF1320_low_81
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 29917720 - 29917865
Alignment:
| Q |
1 |
taatagtaatagtagggtttaatgagtagtagtagtgttggtggtggtgatggtgaaattttctctctagaattccagaaacaaagctggctcaagtcat |
100 |
Q |
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| T |
29917720 |
taatagtagtagtagggtttaatgagtagtagtagtgttggtggtggtgatggtgaaattttctctctagaattccagaaacaaagctggctcaagtcat |
29917819 |
T |
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| Q |
101 |
aaatttcatacatcagatatcattaataaaaaagttacatattatt |
146 |
Q |
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| T |
29917820 |
aaatttcatacatcagatatcattaataaaaaagttacatagtatt |
29917865 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 23994907 - 23994945
Alignment:
| Q |
92 |
tcaagtcataaatttcatacatcagatatcattaataaa |
130 |
Q |
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| T |
23994907 |
tcaagtcataaatttcatacatcatatatcattgataaa |
23994945 |
T |
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