View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_83 (Length: 207)
Name: NF1320_low_83
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 2151267 - 2151114
Alignment:
| Q |
28 |
agatgaaccttataactttgtcactgtcaaggattttgctcgagccttcgaattatttcacgtaggcaaacaacttggagaagagctggccgatccattt |
127 |
Q |
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| T |
2151267 |
agatgaaccttataactttgtcactgtcaaggattttgctcgagccttcgaattatttcacataggcaaacaacttggagaagagctggccgatccattt |
2151168 |
T |
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| Q |
128 |
gacaagtctaaatttcattcaaatgtcttgatcacaaagaaatatgggattaac |
181 |
Q |
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| T |
2151167 |
gacaagtctaaatttcattcaaatgtcttgatcacaaagaaatatgggattaac |
2151114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 2163545 - 2163402
Alignment:
| Q |
28 |
agatgaaccttataactttgtcactgtcaaggattttgctcgagccttcgaattatttcacgtaggcaaacaacttggagaagagctggccgatccattt |
127 |
Q |
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| T |
2163545 |
agatgaaccttatagttttgttactgtcaaggattttgccgaagcatttcagatatttcacataggtcaaaaacttggagatgagctagccaatcctttt |
2163446 |
T |
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| Q |
128 |
gacaagtctaaatttcattcaaatgtcttgatcacaaagaaata |
171 |
Q |
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| T |
2163445 |
gacaagtcgaaatgccatgcaagtgtcttgaccacaaagaaata |
2163402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 4302471 - 4302546
Alignment:
| Q |
99 |
aacttggagaagagctggccgatccatttgacaagtctaaatttcattcaaatgtcttgatcacaaagaaatatgg |
174 |
Q |
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| T |
4302471 |
aacttggagatgagctagccaatccttttgaaaaatctaaatgccatgcaaatgtcttgaccacaaagaaatatgg |
4302546 |
T |
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