View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320_low_9 (Length: 520)
Name: NF1320_low_9
Description: NF1320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 33 - 512
Target Start/End: Complemental strand, 13885574 - 13885094
Alignment:
| Q |
33 |
caatccatgcttttgatttggtagatgagaacaaaaagaaagagattaaattggggaagttaagatgagtttaatgttttaattggattagnnnnnnngt |
132 |
Q |
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| T |
13885574 |
caatccatgcttttgatttggtagatgagaacaaaaagaaagagattaaattggggaagttaagatgagtttaatgttttaattggattagaaaaaaagt |
13885475 |
T |
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| Q |
133 |
gaaaggaaagaaagcaagaggaatgatcgttaaaggcaagaaatgtggaaatgtagtaagaaatgtggttatgcatttgcaatgtcaatcaaacaatagt |
232 |
Q |
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| T |
13885474 |
gaaaggaaagaaagcaagatgaatgatcgttaaaggcaagaaatgtggaaatgtggcaagaaatgtggttatgcatttgcaatgtcaatcaaacaatagt |
13885375 |
T |
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| Q |
233 |
gtgtttgtgt-gtgtaatattaatatatttgattatacaacacatttgttattcccaaaaaatctattaagaattaacttttttatactgaaaatttatt |
331 |
Q |
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| T |
13885374 |
gtgtttgtgttgtgtaatattaatatatttgattatacaacacatttgttattcccaaaaaatctattaagaattaacttttttatgctgaaaatttatt |
13885275 |
T |
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| Q |
332 |
ttctatattatgcatcattgttattttaaatttatagggccaggatgaagtgatccaaagaaataagttaaaagtgaaaaacaaacttttttctaaacat |
431 |
Q |
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| T |
13885274 |
ttctatattatgcatcattgttattttaaatttatagggcgaggatgaagtgatccaaagaaataagttaaaagtgaaaaacaaacttttttctaaacat |
13885175 |
T |
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| Q |
432 |
ttcgtttaaaatcaaattttatacttttcactttcaatggaatttgagtaagagaatttatttttcgtctatatattcttc |
512 |
Q |
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| T |
13885174 |
ttcgtttaaaatcaaattttatacttttcactttcaatggaatttgagtaagagaatttatttttcgtctatattttcttc |
13885094 |
T |
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