View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13210_high_1 (Length: 640)
Name: NF13210_high_1
Description: NF13210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13210_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 19 - 631
Target Start/End: Original strand, 32830532 - 32831144
Alignment:
| Q |
19 |
gtaggcccaagcccaatagnnnnnnntgaaacagcagcacaaacagcaaccacacacaaagcaatagcccacatgggcttttcatctgaattgtgaagta |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32830532 |
gtaggcccaagcccaatagaaaaaaatgaaacagcagcacaaacagcaaccacacacaaagcaatagcccacatgggcttttcatctgaattgtgaagta |
32830631 |
T |
|
| Q |
119 |
aagtacatcccattccaagcccaaataaggacactgccatacctgatgagcccaacaacagcatgggccttcttccaaatttgtctaataccaatgctga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32830632 |
aagtacatcccattccaagcccaaataaggacactgccatacctgatgagcccaacaacaacatgggccttcttccaaatctgtctaataccaatgctga |
32830731 |
T |
|
| Q |
219 |
aaatagaacaaaacatgtctttgctattcccataatgattgtgacaccaaaaagttgcttctcacctttaactccagcttctctaaacacttcaggactg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32830732 |
aaatagaacaaaacatgtctttgctattcccataatgattgtgacaccaaaaagttgcttctcacctttaactccagcttctctaaacacttcaggactg |
32830831 |
T |
|
| Q |
319 |
taatatataacagcatcatttccagaagcttgcatgaaaaaattaataccaactgcagctataagaatccttaatacaggacgtgtaggtgtaattagca |
418 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
32830832 |
taatatataacagcatcatttccagacgcttgcatgaaaaaattaataccaactgctgctataagaatccttagtacaggacgtgtcggtgtaattagca |
32830931 |
T |
|
| Q |
419 |
attctttccataccccttgtccatgcctagaagaagtactagaaattgtagcagcttgtgaaatttctgaaagtctaaattcagcttcacctttattcga |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32830932 |
attctttccataccccttgtccatgcctagaagaagtactagaatttgtagcagcttgtgaaatttctgaaagtctaaattcagcttcacctttattcga |
32831031 |
T |
|
| Q |
519 |
cgatgttctaatcaaaacttgtttcgcttcttcaagcttacctgttggaaaagcaacacaaacagaaaaacacatgatatttggtggtaacacagtttat |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32831032 |
cgatgttctaatcaaaacttgtttcgcttcttcaagtttacctgttggaaaagcaacacaaacagaaaaacacatgatatttggtgataacacagtttat |
32831131 |
T |
|
| Q |
619 |
ccaattgtgccta |
631 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32831132 |
ccaattgtgccta |
32831144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 43547138 - 43547086
Alignment:
| Q |
318 |
gtaatatataacagcatcatttccagaagcttgcatgaaaaaattaataccaa |
370 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||| |||||||| |||| |
|
|
| T |
43547138 |
gtaatatataacggcatcgtttccagatgcttgcatgaagaaattaatcccaa |
43547086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University