View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13210_high_2 (Length: 630)
Name: NF13210_high_2
Description: NF13210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13210_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 46233949 - 46234446
Alignment:
| Q |
1 |
gaaatggagaaatcggaacagtggttttaaattgcggctgcaacataaaaaccacaattaaaaaccatgattggaacagaattgatttacctacaagccc |
100 |
Q |
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| T |
46233949 |
gaaatggagaaatcggaacagtggttttaaattgcggctgcaacataaaaaccacaattaaaaaccatgattggaacagaattgatttacctacaagccc |
46234048 |
T |
|
| Q |
101 |
aaaacttgaaaaaatgtatgaaagtgtaaaataaattccaaacttacttctttctcagtcgggcttaaggcatatggctctaaatctatatccatcttga |
200 |
Q |
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| T |
46234049 |
aaaacttgaaaaaatgtatgaaagtgtaaaataaattccaaacttacttctttctcagtcgggcttaaggcatatggctctaaatctatatccatcttga |
46234148 |
T |
|
| Q |
201 |
agccaacattcttgttttcttttcgagtatgaccttttcgactatgagggtcaaactcaaacacaagcctatttaaatgaattacgacgacagaaggagc |
300 |
Q |
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| T |
46234149 |
agccaacattcttgttttcttttcgagtatgaccttttcgactatgagggtcaaactcaaacacaagcctatttaaatgaattacgacgacagaaggagc |
46234248 |
T |
|
| Q |
301 |
ttctagaagccaacgcttttcctcacagaatccaaccttgttgcagaaactacaagctgcaccatcaatctttgagatattgaagtaaatgtcaagtgcc |
400 |
Q |
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| T |
46234249 |
ttctagaagccaacgcttttcctcacagaatccaaccttgttgcagaaactacaagctgcaccatcaatctttgagatattgaagtaaatgtcaagtgcc |
46234348 |
T |
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| Q |
401 |
gtctgagtgtcacttgcattgtctatgtttaaagtcagatcaaacacttccaggtgtactggttcatcagacgctttacaagagcaacatcgaagctg |
498 |
Q |
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| T |
46234349 |
gtctgagtgtcacttgcattgtctatgtttaaagtcagatcaaacacttccaggtgtactggttcatcagacgctttacaagagcaacatcgaagctg |
46234446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 564 - 613
Target Start/End: Original strand, 46234512 - 46234561
Alignment:
| Q |
564 |
catggttttcttatcacaattacaattgtagcatgctcagccaaacttat |
613 |
Q |
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| T |
46234512 |
catggttttcttatcacaattacaattgtagcatgctcagccaaacttat |
46234561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 27984295 - 27984347
Alignment:
| Q |
95 |
aagcccaaaacttgaaaaaatgtatgaaagtgtaaaataaattccaaacttac |
147 |
Q |
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| T |
27984295 |
aagccaaaaacttgaaaaaatgtatgaaagtgtaaaagaaattccaaacttac |
27984347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 28041597 - 28041649
Alignment:
| Q |
95 |
aagcccaaaacttgaaaaaatgtatgaaagtgtaaaataaattccaaacttac |
147 |
Q |
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| T |
28041597 |
aagccaaaaacttgaaaaaatgtatgaaagtgtaaaagaaattccaaacttac |
28041649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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