View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13210_high_3 (Length: 587)
Name: NF13210_high_3
Description: NF13210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13210_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 106 - 581
Target Start/End: Complemental strand, 44150886 - 44150412
Alignment:
| Q |
106 |
tcttccctaaggagaggcaattgatggcatagtggaccctttcttattatatggcattttaaagtatcataatactgaaatttggctctcagtctcacgg |
205 |
Q |
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| T |
44150886 |
tcttccctaaggagaggcaattgatggcatagtggaccctttcttattatatggcattttaaagtatcataatactgaaatttggctctcagtctcacgg |
44150787 |
T |
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| Q |
206 |
attcacattgacatatccttgacaaacaacaagggtttatggttagccaaagtttccatagacatggtgtggagagagaacaagatcaatggtaccttgt |
305 |
Q |
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| T |
44150786 |
attcatattgacatatccttgacaaacaacaagggtttatggttagccaaagtttccatagacatggt-tggagagagaacatgatcaatggtaccttgt |
44150688 |
T |
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| Q |
306 |
cttgccaaaaagctataaaagacatcttgcagttacttcctttgttaaaagtctagctagctagctctggccccgtgttgtgaaagaaaaactcttcatt |
405 |
Q |
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| T |
44150687 |
cttgccaaaaagctataaaagacatcttgcagttacttccatcgttaaaagtctagctagctagctatggccccgtgttgtgaaagaaaaactcttcatt |
44150588 |
T |
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| Q |
406 |
aattcttgttgtgaaagggcacaacttgttttccacacacgtttcaaaatttattttgtattcatatatagaataataatagaatatcattaactaaatt |
505 |
Q |
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| T |
44150587 |
aattcttgttgttaaagggcacaacttgttttccacacacgtttcaaaatttattttgtattcatatatagaataataatagaatatcattaactaaatt |
44150488 |
T |
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| Q |
506 |
gttttgtcaatgcatgtgaaaggtcgatctatattttctcattctccttagtaaaataaaacttcattcatctcac |
581 |
Q |
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| T |
44150487 |
gttttgtcaatgcatgtgaaaggtcgatctatattttctctttctccttagtaaaataaaacttcattcatctcac |
44150412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 44150944 - 44150911
Alignment:
| Q |
18 |
aaagcaaatggagaaagggattgcccctacaata |
51 |
Q |
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| T |
44150944 |
aaagcaaatggagaaagggattgcccctacaata |
44150911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 95
Target Start/End: Complemental strand, 44150914 - 44150885
Alignment:
| Q |
66 |
aataaggggcaagcataactcaaaagtctc |
95 |
Q |
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| T |
44150914 |
aataaggggcaagcataactcaaaagtctc |
44150885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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