View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13210_high_4 (Length: 535)
Name: NF13210_high_4
Description: NF13210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13210_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 55077276 - 55077454
Alignment:
| Q |
14 |
agaggctatggggaattgtgaatattattctggctattgcacttgctatgacggttgttatcaccaaggcagcggaacatgaacgccgtgtcagccccgg |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55077276 |
agaggctatgggggattgtgaatattattctggctattgcacttgctatgacggttgttatcaccaaggcagcggaacatgaacgccgtgtcagccccgg |
55077375 |
T |
|
| Q |
114 |
tggaacaacactgccttctggccatgttaagactgctgcattcagtttcttcggcgtccttggaattccccttgcggta |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55077376 |
tggaacaacactgccttctggccatgttaaggctgctgcattcagtttcttcggcgtccttggaattccccttgcggta |
55077454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 284 - 520
Target Start/End: Complemental strand, 23147809 - 23147580
Alignment:
| Q |
284 |
aaaatgatgtttagtacggaaaacagcgtacgaaatttgaagaatgacgtggcaaagtttttgaattagtctactcttaactaaaatccaaattgtaaca |
383 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23147809 |
aaaatgttgtttagtacgaaaaacagcttacgaaatttgaagaatgacgtgacaaagcttttgaattagtcaactcttaactaaaatccaaattgtaaca |
23147710 |
T |
|
| Q |
384 |
gnnnnnnnnnnnnnnnnnnntccaaatctaagtatacagtacaccatatcctcctacctacccctttctacactggtatttcaccaatcaccgcctcact |
483 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23147709 |
----aaaaaaaaaactaaaatccaaatctaagtatacggtacaccatatcctcctacc---ccctttctacactggtatttcaccaatcaccgcctcact |
23147617 |
T |
|
| Q |
484 |
agtatttatccatggtgccacagtcataggaaatttg |
520 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
23147616 |
agtaactatccatggtgccacggtcataggaaatttg |
23147580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 284 - 520
Target Start/End: Original strand, 30033441 - 30033669
Alignment:
| Q |
284 |
aaaatgatgtttagtacggaaaacagcgtacgaaatttgaagaatgacgtggcaaagtttttgaattagtctactcttaactaaaatccaaattgtaaca |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
30033441 |
aaaatgatgtttagtacggaaaacagcgtacgaaatttgaagaatgacgtagcaaagcttttgaattagtctgctcttaactaaaatccaaattgtaaaa |
30033540 |
T |
|
| Q |
384 |
gnnnnnnnnnnnnnnnnnnntccaaatctaagtatacagtacaccatatcctcctacctacccctttctacactggtatttcaccaatcaccgcctcact |
483 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30033541 |
-----aaaaaaaaactaaaatccaaatataaatatacagtacaccatatcctcctac---cccctttctacactggtatttcaccaatcaccgcctcacc |
30033632 |
T |
|
| Q |
484 |
agtatttatccatggtgccacagtcataggaaatttg |
520 |
Q |
| |
|
|||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
30033633 |
agtaactatccatggtgccacggtcataagaaatttg |
30033669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 15124699 - 15124623
Alignment:
| Q |
22 |
tggggaattgtgaatattattctggctattgcacttgctatgacggttgttatcaccaaggcagcggaacatgaacg |
98 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||| || ||||||||||| | ||||||||| |||||||||||||| |
|
|
| T |
15124699 |
tgggggattgtgaatatcattcttgctattggtctcgctatgacggtactcatcaccaagatggcggaacatgaacg |
15124623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University