View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13210_high_7 (Length: 452)
Name: NF13210_high_7
Description: NF13210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13210_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 54266371 - 54266803
Alignment:
| Q |
1 |
aaactgattaagcttacaaataaaaaggcatataaaacagattcagaaacttattgacagctacatcacagaattttgaagagaagacaagagagaaaga |
100 |
Q |
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| T |
54266371 |
aaactgattaagcttacaaataaaaaggcatataaaacagattcagaaacttattgacagctacatcacagaattttgaagagaagacaagagagaaaga |
54266470 |
T |
|
| Q |
101 |
atttaacatagagccgattttacagacggccacaaacaaccatctttcagccggctatcacaattctgccagcacaaatttttctaaccccattccttag |
200 |
Q |
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| T |
54266471 |
atttaacatagagccgattttacagacggccacaaacaaccatctttcagccggctatcacaattctgccagcacaaatttttctaaccccattccttag |
54266570 |
T |
|
| Q |
201 |
cccatccctttaaattcttcttcacccaaacactatactataattcataaacattatttannnnnnnnnnnnnacctttcaaattaatgcaccattaata |
300 |
Q |
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| T |
54266571 |
cccatccctttaaattcttcttcacccaaacactatactataattcataaacattttttttatttttatttttacctttcaaattaatgcaccattaata |
54266670 |
T |
|
| Q |
301 |
ctatatataaatatacatctttgctagcttgtttcttcattatacacttcttttttattccaatggcgaaaaaatcgcagaagcaaatagagaaagacga |
400 |
Q |
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| T |
54266671 |
ctatatataaatatacatctttgctagcttgtttcttcagtatacacttctttttttttccaatggcgaaaaaatcgcagaagcaaatagagaaagacga |
54266770 |
T |
|
| Q |
401 |
caatgcaagcaatgataatgataatctgaatcc |
433 |
Q |
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| T |
54266771 |
caatgcaagcaatgataatgataatctgaatcc |
54266803 |
T |
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