View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13210_low_11 (Length: 311)
Name: NF13210_low_11
Description: NF13210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13210_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 5300908 - 5300626
Alignment:
| Q |
12 |
tcatcaatgacattttgggaggagattgcaaatgatgttggtgccgaagttcagcccaagtcactagaactcgacatgaactccatgccagtggtagttg |
111 |
Q |
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| T |
5300908 |
tcatcaatgacattttgggaggagattacaaatgatgttggtgccgaagttcagcccaagtcactagaagtcgacatgaactccatgccagtggtagttg |
5300809 |
T |
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| Q |
112 |
ttcctgatccagttgcaactgagacagatgtagttgttattcctaatcacgttgcaactgagctggatgtaatcgttgttcctaatccggttgcaactga |
211 |
Q |
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| T |
5300808 |
ttcctgatccagttgcaactgagacagatgtagttgttattcctaatcacgttgcaactgagctggatgtaatcgttgttcctaatccggttgcaactga |
5300709 |
T |
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| Q |
212 |
gccagcggtaatcaatgcttccgatcttgttgcagttgacccaactgttgcagttgtccctgattttgttgaaccaaaagaac |
294 |
Q |
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| T |
5300708 |
gccagcggtaatcaatgcttccgatcttgttgcagttgacccaactgttgcagttgtccctgattttgttgaaccaaaagaac |
5300626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 52000304 - 52000369
Alignment:
| Q |
109 |
ttgttcctgatccagttgcaactgagacagatgtagttgttattcctaatcacgttgcaactgagc |
174 |
Q |
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| T |
52000304 |
ttgttcctgatcctgttgcaactaagccagtgctagttgttgttcctaatcatgttgcaactgagc |
52000369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 175
Target Start/End: Original strand, 15621297 - 15621415
Alignment:
| Q |
57 |
gaagttcagcccaagtcactagaactcgacatgaactccatgccagtggtagttgttcctgatccagttgcaactgagacagatgtagttgttattccta |
156 |
Q |
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| T |
15621297 |
gaagttcgccccaagtcactggaaagtgacatgaactatgtgccattggtagttgttcttgatccagatgcatctgggccgaatgtagctgttattcccg |
15621396 |
T |
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| Q |
157 |
atcacgttgcaactgagct |
175 |
Q |
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| T |
15621397 |
atctagttgcaactgagct |
15621415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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