View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13210_low_6 (Length: 481)
Name: NF13210_low_6
Description: NF13210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13210_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 14664714 - 14664228
Alignment:
| Q |
1 |
gttactataatatgcattacatcaccatccacaacatgaaaaagggacttctnnnnnnntcagggtcttataattgtatattgtattgtagtttatttaa |
100 |
Q |
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| T |
14664714 |
gttactataatatgcattacatcaccatccacaacatgaaaaagggacttctaaaaaaatcagggtcttataattgtatattgtattgtagtttatttaa |
14664615 |
T |
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| Q |
101 |
gaacaatggaataagcttgataataataataataactagcggtacataatattctgccctacttgctaagtatctatatatgtgagtggtaaagtagggt |
200 |
Q |
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| T |
14664614 |
gaacaatggaataagcttgataataataataataactagcggtacataatattctgccctacttgctaagtatctatatatgtgagtggtaaagtagggt |
14664515 |
T |
|
| Q |
201 |
catgcttaattgtccaaaaacaatgccaccattttgaaaactaaatttagtgttatttgtcatgatgctgttgtccaccctcccatgcttaaatcatcct |
300 |
Q |
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| T |
14664514 |
catgcttaattgtccaaaaacaatgccaccattttgaaaactaaatttagtgttatttgtcatgatgctgttgtccaccctcccatgcttaaatcgtcct |
14664415 |
T |
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| Q |
301 |
ttactttgtcttccaatatgttttagttttactgctaaggctggcagcatgcataagttgcaacacacacatccataacttg------------------ |
382 |
Q |
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| T |
14664414 |
ttactttgtcttccaatatgttttagttttactgctaaggctggcagcatgcataagttgcaacacacacatccataacttgtaaattaccccccacaag |
14664315 |
T |
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| Q |
383 |
----tttttctcatcttggcaatcatacaaatggaaacaaacaaaatattatgtggtctctgcctctgattgatataaagtacttag |
465 |
Q |
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| T |
14664314 |
ttcttttttctcatcttggcaatgatacaaatggaaacaaacaaaatattatgtggtctctgcctctgattgatataaagtacttag |
14664228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 14665434 - 14665380
Alignment:
| Q |
179 |
tatgtgagtggtaaagtagggtcatgcttaattgtccaaaaac-aatgccaccat |
232 |
Q |
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| T |
14665434 |
tatgtgagtggtaaagtaggaccatgcttaattgtccaaaaacaaatgccaccat |
14665380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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