View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13211_high_1 (Length: 469)
Name: NF13211_high_1
Description: NF13211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13211_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 24201530 - 24201116
Alignment:
| Q |
17 |
agtactcaagctcaaactagtacttggcaacaaccttctccgccacgtccaccactatcactgcgaaatctggaacctgaaatcgaccggctttgtccac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |
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| T |
24201530 |
agtactcaagctcaaactagtacttggcaacaaccttctccaccacgtccaccactatcaccgcgaaatctggaacctgaaatcggctggctttgtccac |
24201431 |
T |
|
| Q |
117 |
caccacctcctccacttccgttttttacaccatcacgactatcagtacgatcagtaccaccgctacaatttcaacctgtaaactccgaacctcaaatcaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
24201430 |
caccacctcctccacttccgttttttacaccatcacgactatcagtacgatcagtaccaccgctacaatttcaacctgtaaactcagaacctcgaatcaa |
24201331 |
T |
|
| Q |
217 |
tcagcggtcttcacaaccgtcgctactgccatcacaaccaccaaatccagaacctcggatcaactggagttctctacctccaccgccaccaccgccnnnn |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24201330 |
tcagcggtcttcacaaccgtcgctactgccatcacaaccaccaaatccagaacctcggatcaactggagttctctacctccaccgccaccaccgcctttt |
24201231 |
T |
|
| Q |
317 |
nnnccaccatcatcatcattattaccactagaatccccggcttcaaaccatgaatctataattaacctgcagaattcacaaccactaccaccaccaccac |
416 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24201230 |
tttccaccaccatcatcattattaccactagaatccccggcttcaaaccatgaatctataattaacctgcagaattcacaaccactaccaccaccaccac |
24201131 |
T |
|
| Q |
417 |
cgccattaccaacgc |
431 |
Q |
| |
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||||||||||||||| |
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| T |
24201130 |
cgccattaccaacgc |
24201116 |
T |
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