View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13211_high_2 (Length: 450)
Name: NF13211_high_2
Description: NF13211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13211_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 9 - 432
Target Start/End: Original strand, 51388242 - 51388665
Alignment:
| Q |
9 |
atagtcagaataaacacattacatatgtaaaacacttagactgataaatgtaaaacctcaaacagtttaaacatcaataggaggaaatacttagattgat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
51388242 |
atagtcagaataaacacattacatatgtaaaacacttagactgataaatgtaaaacctcaaacaggttaaacatcaataggaggaaatacttagattgat |
51388341 |
T |
|
| Q |
109 |
tcagacaaaacagttgacagaaagataaacgggcaacaaacaaaaggttgtagggcctaaggttcaaaaaacagtacaccaaaatacgaaattgtctaaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
51388342 |
tcagacaaaacagttgacagaaagataaacgggcaacaaacaaaaggttgtggggcctaaggttcaaaaaacagtacaccaaaatgggaaatagtctaaa |
51388441 |
T |
|
| Q |
209 |
gcaaataaacgtaacatattgatccagaggcaacacataatctggtatcagacaaaacagaattttaaaattatggacttcatcctccccattagttcag |
308 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51388442 |
gcaaataaacgtaacatattcatccagaggcaacacataatctggtatcagacaaaacaaaattttaaaattatggacttcatcctccccattagttcag |
51388541 |
T |
|
| Q |
309 |
tttctcaaccttgactcatttcatcttctgcggcttgttaattgatctttctccaatctcttcggtgccaagtatagcagaatcctctgcatcagcagac |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |
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| T |
51388542 |
tttctcaaccttgactcatttcatcttctgcggcttgttaattgatctttctccaatctcttcggtgccaagtatagcataatcctctacatcagcggac |
51388641 |
T |
|
| Q |
409 |
cttttccctccatatttgctacca |
432 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
51388642 |
cttttccctccatatttgctacca |
51388665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 5 - 432
Target Start/End: Complemental strand, 26959347 - 26958920
Alignment:
| Q |
5 |
aaaaatagtcagaataaacacattacatatgtaaaacacttagactgataaatgtaaaacctcaaacagtttaaacatcaataggaggaaatacttagat |
104 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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|
| T |
26959347 |
aaaaacagtcagaataaacacattgcatatgtaaaacacttagactgataaatgtaaaacctcaaacagttgaaacatcaataggaggaaatatttagat |
26959248 |
T |
|
| Q |
105 |
tgattcagacaaaacagttgacagaaagataaacgggcaacaaacaaaaggttgtagggcctaaggttcaaaaaacagtacaccaaaatacgaaattgtc |
204 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| ||| |
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|
| T |
26959247 |
tgattcagacaaaacagttgacagaaatataaacgggcaacaaacaaaaggcagtagggcctaaggttcaaaaaacattacaccaaaatgggaaatagtc |
26959148 |
T |
|
| Q |
205 |
taaagcaaataaacgtaacatattgatccagaggcaacacataatctggtatcagacaaaacagaattttaaaattatggacttcatcctccccattagt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
26959147 |
taaagcaaataaacgtaacatattgatccagaaccaacacagaatctggtatcagacaaaacagaaatttaaaattatggacttcatcctccccattagt |
26959048 |
T |
|
| Q |
305 |
tcagtttctcaaccttgactcatttcatcttctgcggcttgttaattgatctttctccaatctcttcggtgccaagtatagcagaatcctctgcatcagc |
404 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26959047 |
tcagtttctcaaccttgacacatatcatcttctgcagcttgttaattgatctatctccaatctcttcggtgccaagtatagcagaatcctctgcatcagc |
26958948 |
T |
|
| Q |
405 |
agaccttttccctccatatttgctacca |
432 |
Q |
| |
|
| |||||||||||||| ||||||||||| |
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|
| T |
26958947 |
aaaccttttccctccagatttgctacca |
26958920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 5 - 432
Target Start/End: Complemental strand, 40950616 - 40950189
Alignment:
| Q |
5 |
aaaaatagtcagaataaacacattacatatgtaaaacacttagactgataaatgtaaaacctcaaacagtttaaacatcaataggaggaaatacttagat |
104 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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|
| T |
40950616 |
aaaaacagtcagaataaacacattgcatatgtaaaacacttagactgataaatgtaaaacctcaaacagttgaaacatcaataggaggaaatatttagat |
40950517 |
T |
|
| Q |
105 |
tgattcagacaaaacagttgacagaaagataaacgggcaacaaacaaaaggttgtagggcctaaggttcaaaaaacagtacaccaaaatacgaaattgtc |
204 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| ||| |
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|
| T |
40950516 |
tgattcagacaaaacagttgacagaaatataaacgggcaacaaacaaaaggcagtagggcctaaggttcaaaaaacattacaccaaaatgggaaatagtc |
40950417 |
T |
|
| Q |
205 |
taaagcaaataaacgtaacatattgatccagaggcaacacataatctggtatcagacaaaacagaattttaaaattatggacttcatcctccccattagt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
40950416 |
taaagcaaataaacgtaacatattgatccagaaccaacacagaatctggtatcagacaaaacagaaatttaaaattatggacttcatcctccccattagt |
40950317 |
T |
|
| Q |
305 |
tcagtttctcaaccttgactcatttcatcttctgcggcttgttaattgatctttctccaatctcttcggtgccaagtatagcagaatcctctgcatcagc |
404 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40950316 |
tcagtttctcaaccttgacacatatcatcttctgcagcttgttaattgatctatctccaatctcttcggtgccaagtatagcagaatcctctgcatcagc |
40950217 |
T |
|
| Q |
405 |
agaccttttccctccatatttgctacca |
432 |
Q |
| |
|
| |||||||||||||| ||||||||||| |
|
|
| T |
40950216 |
aaaccttttccctccagatttgctacca |
40950189 |
T |
|
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