View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13211_high_3 (Length: 335)
Name: NF13211_high_3
Description: NF13211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13211_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 24201400 - 24201116
Alignment:
| Q |
13 |
catcacgactatcagtacgatcagtaccaccgctacaatttcaacctgtaaactccgaacctcaaatcaatcagcggtcttcacaaccgtcgctactgcc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24201400 |
catcacgactatcagtacgatcagtaccaccgctacaatttcaacctgtaaactcagaacctcgaatcaatcagcggtcttcacaaccgtcgctactgcc |
24201301 |
T |
|
| Q |
113 |
atcacaaccaccaaatccagaacctcggatcaactggagttctctacctccaccgccaccaccgccnnnnnnnccaccatcatcatcattattaccacta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
24201300 |
atcacaaccaccaaatccagaacctcggatcaactggagttctctacctccaccgccaccaccgcctttttttccaccaccatcatcattattaccacta |
24201201 |
T |
|
| Q |
213 |
gaatccccggcttcaaaccatgaatctataattaacctgcagaattcacaaccactaccaccaccaccaccgccattaccaacgc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24201200 |
gaatccccggcttcaaaccatgaatctataattaacctgcagaattcacaaccactaccaccaccaccaccgccattaccaacgc |
24201116 |
T |
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