View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13211_high_4 (Length: 332)
Name: NF13211_high_4
Description: NF13211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13211_high_4 |
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| [»] scaffold0063 (2 HSPs) |
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Alignment Details
Target: scaffold0063 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 71 - 319
Target Start/End: Original strand, 53841 - 54089
Alignment:
| Q |
71 |
tctatgaagcattaggaatttaaaaataacgtacgcggaagctaaagatgactttgtgttagaataataacctaatactagtactcctatatattggggc |
170 |
Q |
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| T |
53841 |
tctatgaagcattaggaatttaaaaataacgtacgcggaagctaaagatgactttgtgttagaataataacctaatactagtactcctatatattggggc |
53940 |
T |
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| Q |
171 |
ctagcccatttcgtttcacnnnnnnnnnnnnntacagatgagtttaattaatttaaacaatatccccactataaatattgtgtataataagcagataact |
270 |
Q |
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| T |
53941 |
ctagcccatttcgtttcacaaaaaacaaaaaatacagatgggtttaattaatttaaataatatccccactataaatattgtgtataataagcagataact |
54040 |
T |
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| Q |
271 |
tctgaaaataattaggaaatggtaagagcacctttctatgacaaaaatg |
319 |
Q |
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| T |
54041 |
tctgaaaatcattaggaaatggtaagagcacctttctatgacaaaaatg |
54089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 53786 - 53821
Alignment:
| Q |
16 |
attagagtgaatagaatctacaaataatatttgtac |
51 |
Q |
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| T |
53786 |
attagagtgaatagaatctacaaataatatttgtac |
53821 |
T |
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