View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13211_low_3 (Length: 377)
Name: NF13211_low_3
Description: NF13211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13211_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 205 - 360
Target Start/End: Complemental strand, 32507520 - 32507365
Alignment:
| Q |
205 |
gaaagataaccaaacatacatcaaacatagtacactaacatgaaaattaagataacaaacttgaggaatggaaaacctgaaaattcaactccaaattttc |
304 |
Q |
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| T |
32507520 |
gaaagataaccaaacatacatcaaacatagtacactaacatgaaaattaacataacaaacttgaggaatggaaaacctgaaaattcaactccaaattttc |
32507421 |
T |
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| Q |
305 |
ttcatttcctaagcataaaccattgaaccgaaccgaactattccaaatccaaattc |
360 |
Q |
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| T |
32507420 |
ttcatttcctaagcataaaccattgaaccgaaccgaactattccaaatccaaattc |
32507365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 32507725 - 32507585
Alignment:
| Q |
1 |
cacaacttcatctagctcttcacaaacatggaaagtatatgaagataaatcaagcaaactatagctataatgcatattttcataccaaaactaaaacttg |
100 |
Q |
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| T |
32507725 |
cacaacttcatctagctcttcacaaacatggaaagtatatgaagataaatcaagcaaactatagctataatgcatattttcataccaaaactaaaacttg |
32507626 |
T |
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| Q |
101 |
-ataacaaattacacaatagatatatagtcactacaaattg |
140 |
Q |
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| T |
32507625 |
aataacaaattacacaatagatatatagtcactacaaattg |
32507585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 9763761 - 9763684
Alignment:
| Q |
48 |
aatcaagcaaactatagctataatgcatattttcatacc-aaaactaaaacttgataacaaattacacaatagatata |
124 |
Q |
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| T |
9763761 |
aatcaagaaaactatagctatgattcatgttttcataccaaaaattaaaacttgataacaaattacataatagttata |
9763684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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