View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13212_high_1 (Length: 1129)

Name: NF13212_high_1
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13212_high_1
NF13212_high_1
[»] chr5 (3 HSPs)
chr5 (136-809)||(35475925-35476598)
chr5 (848-1113)||(35476637-35476902)
chr5 (1-48)||(35475789-35475836)
[»] chr3 (2 HSPs)
chr3 (262-419)||(31553553-31553710)
chr3 (519-770)||(31554017-31554271)
[»] chr2 (4 HSPs)
chr2 (140-204)||(13453847-13453911)
chr2 (175-207)||(14482240-14482272)
chr2 (140-204)||(43820633-43820697)
chr2 (140-203)||(39801060-39801123)
[»] chr8 (1 HSPs)
chr8 (140-204)||(26629001-26629065)
[»] chr1 (1 HSPs)
chr1 (140-204)||(27804724-27804788)
[»] chr4 (1 HSPs)
chr4 (140-203)||(56215718-56215781)
[»] chr6 (1 HSPs)
chr6 (140-210)||(34019815-34019885)


Alignment Details
Target: chr5 (Bit Score: 601; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 136 - 809
Target Start/End: Original strand, 35475925 - 35476598
Alignment:
Q  136 gtctaataagaatagagaaaaagtggttgtcnnnnnnnttgtataaaattagttgtacaaatatcactcttcatattgatattagagataattaatttta 235  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  35475925 gtctaataagaatagagaaaaagtggttgtcaaaaaaattgtataaaattagttatacaaatatcactcttcatattgatattagagatatttaatttta 35476024  T
Q  236 ccatattgttgcttttgtttggttacttgcagataacgtttgagttgacagtgaagcagctgatgagttttgatccaggtgaatggactgagactctaag 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35476025 ccatattgttgcttttgtttggttacttgcagataacgtttgagttgacagtgaagcagctgatgagttttgatccaggtgaatggactgagactctaag 35476124  T
Q  336 gaaagagtacgttctcgtgattgaaggattttttacccttcccttaccactcctctctagtacctaccgcagagcaatcaaggtaacacacgtgcacttg 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35476125 gaaagagtacgttctcgtgattgaaggattttttacccttcccttaccactcctctctagtacctaccgcagagcaatcaaggtaacacacgtgcacttg 35476224  T
Q  436 ttacaaaagtttaagatagacatttattaagtccgtaagtgtagctcagttcgtaattattagagccattatgttcaattatgtaggcaagaacgaaggt 535  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  35476225 ttacaaaagtttaaggtagacatttattaagtccgtaagtgtagctcagtttgtaactatcagagccattatgttcaattatgtaggcaagaacgaaggt 35476324  T
Q  536 agcagaggcattgacattgattgtgaggcagagaagaaaagaaagtgtaatgggggagacaaaaactgacatgctaggtgcattgttggcctctggcgac 635  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35476325 agcagaggcattgacattgattgtgaggcagagaagaaaagaaagtgtaatgggggagacaaaaactgacatgctaggtgcattgttggcatctggcgac 35476424  T
Q  636 cacttttccaatgaacaaatagtcgatttcatgttggcattgctcgtcgccggttatgaaaccacctctaccataatgacatttgcggtcaagtttctca 735  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  35476425 cacttttccaatgaacaaatagtcgatttcatgttggcattactcgtcgccggatatgaaaccacctctaccataatgacattcgcggtcaagtttctca 35476524  T
Q  736 ccgaacatcctctagcattggcacaactcaaggtaaatttaagaatttaagaatttcatttataaacatctcaa 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  35476525 ccgaacatcctctagcattggcacaactcaaggtaaatttaagaatttaaggatagcatttataaacatctcaa 35476598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 848 - 1113
Target Start/End: Original strand, 35476637 - 35476902
Alignment:
Q  848 cttgtgccttaaggatacaagttagcatttctaaaagnnnnnnngtatattgttggtgcatattttttggtcaaactaatacatcacatttgttttatag 947  Q
    ||||||||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35476637 cttgtgccttaaggacacaagttagcatttctaaaagaaataaagtatattgttggtgcatattttttggtcaaactaatacatcacatttgttttgtag 35476736  T
Q  948 tattatttagctagggtagtggaccatatatagatataggtccatgcttatagaattaccccaccaccgtgtccatgtccatccccatcgttcatgtggt 1047  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35476737 tattatttagctagggtagtggaccatatatagatataggtccatgcttatagaattaccccaccaccgtgtccatgtccatccccatcgttcatgtggt 35476836  T
Q  1048 gtggtttcctttcaaacctcattttcgttatctgttcctcaccacttcccccaccctacctatatt 1113  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35476837 gtggtttcctttcaaacctcattttcgttatctgtccctcaccacttcccccaccctacctatatt 35476902  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35475789 - 35475836
Alignment:
Q  1 ctcaaaatggttgtgatgatgtcgatagagaattgatattagtacaat 48  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||    
T  35475789 ctcacaatggttgtgatgatgtcgatagagaattgatattcgtacaat 35475836  T

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Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 262 - 419
Target Start/End: Original strand, 31553553 - 31553710
Alignment:
Q  262 ttgcagataacgtttgagttgacagtgaagcagctgatgagttttgatccaggtgaatggactgagactctaaggaaagagtacgttctcgtgattgaag 361  Q
    ||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||||| | |||||||||||||| | || || |||||||    
T  31553553 ttgcagataacatttgagttgacagttaaacagctgatgagttttgatccagatgaatggactgagagtttaaggaaagagtacatgcttgtaattgaag 31553652  T
Q  362 gattttttacccttcccttaccactcctctctagtacctaccgcagagcaatcaaggt 419  Q
    | ||||| || || || || || ||  ||||||  |||||||| ||||| ||||||||    
T  31553653 ggtttttcactctcccatttcctcttttctctaccacctaccgtagagccatcaaggt 31553710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 519 - 770
Target Start/End: Original strand, 31554017 - 31554271
Alignment:
Q  519 taggcaagaacgaaggtagcagaggcattgacattgattgtgaggcagagaagaaaagaaagtgtaatgggg---gagacaaaaactgacatgctaggtg 615  Q
    ||||||||||| ||||| ||||||||| ||||| |  | ||||||||||| |||||||| | || ||| ||    |||| ||| | ||||||||| || |    
T  31554017 taggcaagaacaaaggtggcagaggcactgacactagtagtgaggcagaggagaaaagagaatgaaataggcatagagaaaaagaatgacatgcttggag 31554116  T
Q  616 cattgttggcctctggcgaccacttttccaatgaacaaatagtcgatttcatgttggcattgctcgtcgccggttatgaaaccacctctaccataatgac 715  Q
    |||||||||| ||||| || || || || || ||  ||||||| ||||| |||||||| |||||||| || ||||||||||| || ||||| || |||||    
T  31554117 cattgttggcatctggtgaacagttctcaaacgaggaaatagttgattttatgttggctttgctcgttgctggttatgaaactacttctacaattatgac 31554216  T
Q  716 atttgcggtcaagtttctcaccgaacatcctctagcattggcacaactcaaggta 770  Q
      ||||  |||| |||||||| |||  |||| |||| ||||||||||||||||||    
T  31554217 tcttgccatcaaatttctcactgaaactcctttagccttggcacaactcaaggta 31554271  T

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Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 13453911 - 13453847
Alignment:
Q  140 aataagaatagagaaaaagtggttgtcnnnnnnnttgtataaaattagttgtacaaatatcactc 204  Q
    |||||||| ||||||||||||||||||       |||||||||||| ||||||||||||||||||    
T  13453911 aataagaagagagaaaaagtggttgtcacaaaaattgtataaaattggttgtacaaatatcactc 13453847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 14482240 - 14482272
Alignment:
Q  175 tgtataaaattagttgtacaaatatcactcttc 207  Q
    |||||||||||||||||||||||||||||||||    
T  14482240 tgtataaaattagttgtacaaatatcactcttc 14482272  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 43820697 - 43820633
Alignment:
Q  140 aataagaatagagaaaaagtggttgtcnnnnnnnttgtataaaattagttgtacaaatatcactc 204  Q
    |||||||||| ||||||||||||||||       || ||||||||| ||||||||||||||||||    
T  43820697 aataagaataaagaaaaagtggttgtcacaaagattatataaaattggttgtacaaatatcactc 43820633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 39801123 - 39801060
Alignment:
Q  140 aataagaatagagaaaaagtggttgtcnnnnnnnttgtataaaattagttgtacaaatatcact 203  Q
    ||||||||||||||||||||| |||||       ||||| |||||| |||||||||||||||||    
T  39801123 aataagaatagagaaaaagtgattgtcacaaaggttgtacaaaattggttgtacaaatatcact 39801060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 26629065 - 26629001
Alignment:
Q  140 aataagaatagagaaaaagtggttgtcnnnnnnnttgtataaaattagttgtacaaatatcactc 204  Q
    |||||||||| ||||||||||||||||       ||||| |||||| ||||||||||||||||||    
T  26629065 aataagaataaagaaaaagtggttgtcacaaatgttgtacaaaattggttgtacaaatatcactc 26629001  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 27804788 - 27804724
Alignment:
Q  140 aataagaatagagaaaaagtggttgtcnnnnnnnttgtataaaattagttgtacaaatatcactc 204  Q
    ||||| |||||||||||||||||||||       |||| ||||||| ||||||||||||||||||    
T  27804788 aataaaaatagagaaaaagtggttgtcacaaagattgtgtaaaattggttgtacaaatatcactc 27804724  T

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Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 56215718 - 56215781
Alignment:
Q  140 aataagaatagagaaaaagtggttgtcnnnnnnnttgtataaaattagttgtacaaatatcact 203  Q
    |||||||||||||||||||||||||||       ||||| ||||||  ||||||||||||||||    
T  56215718 aataagaatagagaaaaagtggttgtcagaaaggttgtacaaaattgattgtacaaatatcact 56215781  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 34019885 - 34019815
Alignment:
Q  140 aataagaatagagaaaaagtggttgtcnnnnnnnttgtataaaattagttgtacaaatatcactcttcata 210  Q
    |||||||| ||||||||||||||| ||       ||||| |||||||||||||||||||||| || |||||    
T  34019885 aataagaagagagaaaaagtggttatcacaaaggttgtacaaaattagttgtacaaatatcagtcatcata 34019815  T

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