View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13212_high_16 (Length: 330)
Name: NF13212_high_16
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 3855199 - 3855510
Alignment:
| Q |
1 |
tgagcaaattggggaagggttctaataactcgtctgtttgtttagcaagagcatcaagagtatcattatcatcatgggtgctgacattttttatgagtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3855199 |
tgagcaaattggggaagggttctaataactcgtctgtttgtttagcaagagcatcaagagtatcattatcatcatgggtgctgacattttttatgagtaa |
3855298 |
T |
|
| Q |
101 |
atcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttgagttcgggcaaatga |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
3855299 |
atcctcgagaaatggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttaagtttgggcaaatga |
3855398 |
T |
|
| Q |
201 |
gtaaaacgtttatgaacatggtgtatagttaagaccccattcccattcaagttcaaaacaacaagaggtgaataagttagaatgccatgtggcaagcaaa |
300 |
Q |
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|||| | ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
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| T |
3855399 |
gtaagatatttatcaacatggtatatcattaagaccccattcccattcaagttcaaaacaacaagaggtgaataagttagaatgggacctgggaagcaaa |
3855498 |
T |
|
| Q |
301 |
tgggggtagtgg |
312 |
Q |
| |
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|||||||||||| |
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| T |
3855499 |
tgggggtagtgg |
3855510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 4141424 - 4141153
Alignment:
| Q |
1 |
tgagcaaattggggaagggttctaataactcgtctgtttgtttagcaagagcatcaagagtatcattatcatcatgggtgctgacattttttatgagtaa |
100 |
Q |
| |
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||||||| ||||||||||||| ||| |||| |||| ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| || |
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| T |
4141424 |
tgagcaatttggggaagggttttaacaacttgtctctttgtttagtaagagcatcaagagtatcattatcatcattggtggtgacattttttatgagcaa |
4141325 |
T |
|
| Q |
101 |
atcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttttgagttcgggcaaatga |
200 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| | ||||| || | |
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| T |
4141324 |
atcctcaagaagtggacatacagagagaatctgaataagatatttaagctttagaaaatgaacctttgtcatgtggagtttttcgaggttgggcagatta |
4141225 |
T |
|
| Q |
201 |
gtaaaacgtttatgaacatggtgtatagttaagaccccattcccattcaagttcaaaacaacaagaggtgaa |
272 |
Q |
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||| || || || |||| || ||| ||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
4141224 |
gtataagattcataaacacagtctattgttaacaccccattcccattcaagttcaaaacaacaagagttgaa |
4141153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 84 - 247
Target Start/End: Complemental strand, 1882095 - 1881932
Alignment:
| Q |
84 |
acattttttatgagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttt |
183 |
Q |
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|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||| |||| | ||||||||||| |
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| T |
1882095 |
acatttttgatgagtaaatcctcaagaagcggacatacagagagaatcttaataagaaattgaagctttagaaaatgaacccttgtgaagtggagttttt |
1881996 |
T |
|
| Q |
184 |
tgagttcgggcaaatgagtaaaacgtttatgaacatggtgtatagttaagaccccattcccatt |
247 |
Q |
| |
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|||| | |||||||| ||||| | |||||||||| || ||||||||||||||||||||||| |
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| T |
1881995 |
tgaggttgggcaaattagtaagagagttatgaacattgtcaatagttaagaccccattcccatt |
1881932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 41541889 - 41541770
Alignment:
| Q |
84 |
acattttttatgagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttt |
183 |
Q |
| |
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|||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||| ||| ||||||| ||||| ||||| |||| | ||||||||||| |
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| T |
41541889 |
acatttttgatgagtaaatcctcaagaagcggacatacggagagaatcttaataagaaattgaagctttggaaaatgaacccttgtgaagtggagttttt |
41541790 |
T |
|
| Q |
184 |
tgagttcgggcaaatgagta |
203 |
Q |
| |
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|||| | |||||||| |||| |
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| T |
41541789 |
tgaggttgggcaaattagta |
41541770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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