View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13212_high_21 (Length: 303)
Name: NF13212_high_21
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 24 - 293
Target Start/End: Complemental strand, 32184945 - 32184660
Alignment:
| Q |
24 |
catctcacaccattcctaagactagcagcattgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactgtctctcttgcagaatccc |
123 |
Q |
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| T |
32184945 |
catctcacaccattcctaagactagcatcattgtttcttaacaacaattgcaaagtcactctcatcactcctcttcccactgtctctcttgcagaatccc |
32184846 |
T |
|
| Q |
124 |
agcttcttgatcactttcactcttcttttcctcaagtca----------------tcttcaaccttcttctcctgattctgttgttgatccttttttcca |
207 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32184845 |
agcttcttgatcactttcactcttctttccctcaagtcaacttcatcccatttcatcttcaaccttcttctcctgattctgttgttgatccttttttcca |
32184746 |
T |
|
| Q |
208 |
tagagttcaaacccttcgcgacttcaccaaccttcttcctcctttgatctcttcactttcaccacccatcactgttttcatctctg |
293 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32184745 |
tagagttcaaacccttcgcgactccaccaaccttcttcctcctttgatctcttcactttcaccacccatcactgttttcatctctg |
32184660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 32177784 - 32177648
Alignment:
| Q |
24 |
catctcacaccattcctaagactagcagcattgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactgtctctcttgcagaatccc |
123 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
32177784 |
catctcacaccattcctaagactagcatcattgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactgtttctcttgcagaatcac |
32177685 |
T |
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| Q |
124 |
agcttcttgatcactttcactcttcttttcctcaagt |
160 |
Q |
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| || ||||||||||||||||||| ||| |||||||| |
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| T |
32177684 |
aactccttgatcactttcactcttgtttccctcaagt |
32177648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 32177595 - 32177493
Alignment:
| Q |
191 |
gttgatccttttttccatagagttcaaacccttcgcgacttcaccaaccttcttcctcctttgatctcttcactttcaccacccatcactgttttcatct |
290 |
Q |
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||||| |||||||||| | |||| |||||||||||| ||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |
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| T |
32177595 |
gttgacccttttttccttcgagtccaaacccttcgcaactccacccaccttcttccttcattgatctcttcactttcaccacccatcactgtttttatct |
32177496 |
T |
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| Q |
291 |
ctg |
293 |
Q |
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||| |
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| T |
32177495 |
ctg |
32177493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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