View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13212_high_24 (Length: 285)
Name: NF13212_high_24
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_high_24 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 26495301 - 26495552
Alignment:
| Q |
20 |
ataaacatacctaatcttaacagaaagaggagtccaacattgtgtgaaaattatatcaccccttttggttccaaaaagccaatactccctcaaacatttc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26495301 |
ataaacatacctaatcttaacagaaagaggagtccaacattgtgtgaaaattatatcaccccttttggttccaaaaagccaatactccctcaaacatttc |
26495400 |
T |
|
| Q |
120 |
tcatcaccatcctccaaaactctccttatagccaattccctcctcatcataggatccaacaccttcatggaaaccacaccaacagcaccaccactcttcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26495401 |
tcatcaccatcctccaaaactctccttatagccaattccctcctcatcataggatccaacaccttcatggaaaccacaccaacaccaccaccactcttcc |
26495500 |
T |
|
| Q |
220 |
atggcacaatctttgccggaacgcgcaccaccgtgcctttccgatgatgatg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26495501 |
atggcacaatctttgccggaacgcgcaccaccgtgcctttccgatgatgatg |
26495552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University