View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13212_high_29 (Length: 261)

Name: NF13212_high_29
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13212_high_29
NF13212_high_29
[»] chr8 (3 HSPs)
chr8 (69-135)||(44561434-44561500)
chr8 (12-74)||(44572472-44572534)
chr8 (192-249)||(44561384-44561441)


Alignment Details
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 44561500 - 44561434
Alignment:
Q  69 actattatcattttaaaatccttcaattgctcctgaaacatacgtaaaactaattgtaatttcttct 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44561500 actattatcattttaaaatccttcaattgctcctgaaacatacgtaaaactaattgtaatttgttct 44561434  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 44572534 - 44572472
Alignment:
Q  12 aattctttaatccttcctgtattatgatacttttgtatatggtatagtttaatatatactatt 74  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44572534 aattctttaatccttcctgtattatgatacttttatatatggtatagtttaatatatactatt 44572472  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 44561441 - 44561384
Alignment:
Q  192 tttgttcttaatcttctttccaactgaattgaatgaactcgaccgatcccatgaccaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44561441 tttgttcttaatcttctttccaactgaattgaatgaactcgaccgatcccatgaccaa 44561384  T

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