View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13212_high_3 (Length: 756)
Name: NF13212_high_3
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_high_3 |
 | |
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| [»] scaffold0154 (1 HSPs) |
| | |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 17 - 749
Target Start/End: Complemental strand, 6683 - 5945
Alignment:
| Q |
17 |
atgaaagtagctttcagggattctggaattacaaaacaaaatttctcnnnnnnnccatccaaacttttgtagttacaaagaaacttcctcaaaaggacca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6683 |
atgaaagtagctttcagggattctggaattacaaaacaaaatttctctttttttccatccaaacttttgtagttacaaagaaacttcctcaaaaggacca |
6584 |
T |
|
| Q |
117 |
tcaatgtaaccaatctttaagaaaagatatgtcttttttgtgtgctaggctgccagctagttccttcccttttctttgatatcatctatctatatattct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6583 |
tcaatgtaaccaatctttaagaaaagatatgtcttttttgtgtgctaggctgccagctagttccttcccttttctttgatatcatctatctatatattct |
6484 |
T |
|
| Q |
217 |
ctccaacaatgtctatgctcaatgctcatgctcatgct------ttgccacttcccacatctttaaaacaacattctattatacgaaacttacaatgtat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6483 |
ctccaacaatgtctatgctcaatgctcatgctcatgctcatgctttgccacttcccacatctttaaaacaacattctattatacgaaacttacaatgtat |
6384 |
T |
|
| Q |
311 |
atattccacttttctctaagtaaattaactttatttccaattctaaatagctcctccttttggtgnnnnnnncccccttccaaaatcaaccagtagcgta |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
6383 |
atattccacttttctctaagtaaattaactttatttccaattctaaatagctcctccttttggtgttttttttccccttccaaaatcaaccagtagcgta |
6284 |
T |
|
| Q |
411 |
aatgaagatactaacgaactagactctattcaagtgaagtgaaagtgacaatacccctcatatataagtggatctatatacggctgaaatgagcaccttt |
510 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6283 |
aatgaagatactaacgaactagactcaattcaagtgaagtgaaagtgacaatacccctcatatataagtggatctatatacggctgaaatgagcaccttt |
6184 |
T |
|
| Q |
511 |
cattgtcctcatcttcattatagaaataaccaatttttgtactcaatattatgtctaataaaccattaatttggtatctatatttgtaagtagctaacaa |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6183 |
cattgtcctcatcttcattatagaaataaccaatttttgtactcaatattatgtctaataaaccattaatttggtatctatatttgtaagtagctaacaa |
6084 |
T |
|
| Q |
611 |
attagtctttgaccctgttaatatttcaaattagtctttatctttatcaaacgtttctcagttaagtgtgttattatatgacaaaaacataaaaacatgg |
710 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6083 |
attagtctttgactttgttaatatttcaaattagtctttgtctttatcaaacgtttctcagttaagtgtgttattatatgacaaaaacataaaaacatgg |
5984 |
T |
|
| Q |
711 |
acctaattgaaaaactattgtttttcccaccctatgcta |
749 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5983 |
acctaattgaaaaactattgtttttcccaccctatgcta |
5945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 608 - 726
Target Start/End: Complemental strand, 10028934 - 10028816
Alignment:
| Q |
608 |
caaattagtctttgaccctgttaatatttcaaattagtctttatctttatcaaacgtttctcagttaagtgtgttattatatgacaaaaacataaaaaca |
707 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||| || ||||| ||||| |||| ||| || || | | |||| ||||||||||||||| ||| |
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| T |
10028934 |
caaattagtctttgactttattaatatttcaaactagtcgttgtctttttcaaaggtttttcaatttggtctctcattaagtgacaaaaacataaagaca |
10028835 |
T |
|
| Q |
708 |
tggacctaattgaaaaact |
726 |
Q |
| |
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||||||||||||| ||||| |
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| T |
10028834 |
tggacctaattgagaaact |
10028816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 608 - 666
Target Start/End: Original strand, 21136606 - 21136664
Alignment:
| Q |
608 |
caaattagtctttgaccctgttaatatttcaaattagtctttatctttatcaaacgttt |
666 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| ||||| |||||||| ||||| |||| |
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|
| T |
21136606 |
caaattagtctttgactctattaatatttcaaaatagtccttatctttgtcaaaagttt |
21136664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 608 - 670
Target Start/End: Original strand, 10028670 - 10028732
Alignment:
| Q |
608 |
caaattagtctttgaccctgttaatatttcaaattagtctttatctttatcaaacgtttctca |
670 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||||||||||| || |||| |||||||| |
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|
| T |
10028670 |
caaattagtcactgactctattaatatttcaaattagtctttatccttgccaaaagtttctca |
10028732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 720
Target Start/End: Complemental strand, 45965881 - 45965752
Alignment:
| Q |
591 |
tatttgtaagtagctaacaaattagtctttgaccctgttaatatttcaaattagtctttatctttatcaaacgtttctcagttaagtgtgttattatatg |
690 |
Q |
| |
|
||||||||||| || ||||||||| | |||| || ||||||||||||| |||| |||||||| ||||| |||||||| ||| || || | |||| |
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|
| T |
45965881 |
tatttgtaagtcactctcaaattagtttgtgactctattaatatttcaaactagttattatctttttcaaaagtttctcaattaggtcctttgtcatata |
45965782 |
T |
|
| Q |
691 |
acaaaaacataaaaacatggacctaattga |
720 |
Q |
| |
|
||||||||||||| | |||||| ||||||| |
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| T |
45965781 |
acaaaaacataaagatatggacataattga |
45965752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 728
Target Start/End: Original strand, 15965709 - 15965748
Alignment:
| Q |
689 |
tgacaaaaacataaaaacatggacctaattgaaaaactat |
728 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
15965709 |
tgacaaaaacataaagacatgaacctaattgaaaaactat |
15965748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 628 - 670
Target Start/End: Complemental strand, 7790451 - 7790409
Alignment:
| Q |
628 |
ttaatatttcaaattagtctttatctttatcaaacgtttctca |
670 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| |||||||| |
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|
| T |
7790451 |
ttaatatttcaaattagtttctatctttatcaaaagtttctca |
7790409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 608 - 646
Target Start/End: Complemental strand, 10377606 - 10377568
Alignment:
| Q |
608 |
caaattagtctttgaccctgttaatatttcaaattagtc |
646 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| |
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|
| T |
10377606 |
caaattagtctttgactctattaatatttcaaattagtc |
10377568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 608 - 670
Target Start/End: Original strand, 27293299 - 27293361
Alignment:
| Q |
608 |
caaattagtctttgaccctgttaatatttcaaattagtctttatctttatcaaacgtttctca |
670 |
Q |
| |
|
||||||||||| |||| || |||||||||||||||||| |||||||| |||| |||||||| |
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|
| T |
27293299 |
caaattagtctctgactctattaatatttcaaattagttcttatctttgccaaaagtttctca |
27293361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 677
Target Start/End: Complemental strand, 6280 - 6211
Alignment:
| Q |
608 |
caaattagtctttgaccctgttaatatttcaaattagtctttatctttatcaaacgtttctcagttaagt |
677 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| |||| ||| |||| | ||| |||||||| |||||| |
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|
| T |
6280 |
caaattagtctttgactctattaatatttcaaaatagtttttgcctttgttaaaagtttctcaattaagt |
6211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 661
Target Start/End: Complemental strand, 122601 - 122548
Alignment:
| Q |
608 |
caaattagtctttgaccctgttaatatttcaaattagtctttatctttatcaaa |
661 |
Q |
| |
|
||||||||||| |||| || ||||||||||||| |||||||| ||||| ||||| |
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|
| T |
122601 |
caaattagtctctgactctattaatatttcaaactagtctttgtctttgtcaaa |
122548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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