View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13212_high_35 (Length: 245)
Name: NF13212_high_35
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 37992400 - 37992177
Alignment:
| Q |
1 |
gtgaaggtagcttcaaaatctaaaagcacgattaaagtcgttttagaggatagcaggggcatgttgtgttttaaaatttcaatcaaatgctccttatgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37992400 |
gtgaaggtagcttcaaaatctaaaagcacgattaaagtcgttttagaggatagcaggggcatgttgtgttttaaaatttcaatcaaatgctccttatgtc |
37992301 |
T |
|
| Q |
101 |
aattgcttttttaaaaattcccttgatgtcaattgttacctgaactataaaacaacaaataatcgtaatccttaagtcaccactcatattcattcctttt |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37992300 |
aattgcttttttaacaattcccttgatgtcaattgttacctgaactataaaacaacaaataatcgtaatccttaagtcatcactcatattcattcctttt |
37992201 |
T |
|
| Q |
201 |
ttatatctttcaaaagtttgttat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
37992200 |
ttatatctttcaaaagtttgttat |
37992177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 39470423 - 39470628
Alignment:
| Q |
1 |
gtgaaggtagcttcaaaatctaaaagcacgattaaagtcgttttagaggatagcaggggcatgtt--gtgttttaaaatttcaatcaaatgctccttatg |
98 |
Q |
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|||| |||||||| |||||||||||||||| ||||| ||||||||| |||||| ||||||||||| ||||||||||||||||||||||| | ||| ||| |
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| T |
39470423 |
gtgatggtagcttgaaaatctaaaagcacgcttaaaatcgttttagtggatagtaggggcatgttttgtgttttaaaatttcaatcaaatacccctcatg |
39470522 |
T |
|
| Q |
99 |
tcaattgcttttttaaaaattcccttgatgtcaattgttacctgaac--tataaaacaacaaataatcgtaatccttaagtcaccactcatattcattcc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| ||| |||||||||||||||||||| |
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| T |
39470523 |
tcaattgcttttttaaaaattcccttgatgtcaattgttacctgaactatataaaacaacaaataatcatgatcattatgtcaccactcatattcattct |
39470622 |
T |
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| Q |
197 |
tttttt |
202 |
Q |
| |
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|||||| |
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| T |
39470623 |
tttttt |
39470628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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