View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13212_high_36 (Length: 245)
Name: NF13212_high_36
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 6996720 - 6996673
Alignment:
| Q |
181 |
tggctacatcttaacaaaggacacaaaccaagagcattagctaggaaa |
228 |
Q |
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| T |
6996720 |
tggctacatcttaacaaaggacacaaaccaagagcattagctaggaaa |
6996673 |
T |
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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 6996815 - 6996762
Alignment:
| Q |
85 |
taagtaattagattaaagtactttgcttgtcaaataaacaaagattcgagtatac |
139 |
Q |
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| T |
6996815 |
taagtaattagattaa-gtacttagcttgtcaaataaacaaagattcgagtatac |
6996762 |
T |
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