View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13212_high_4 (Length: 745)
Name: NF13212_high_4
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 38 - 500
Target Start/End: Complemental strand, 31796912 - 31796451
Alignment:
| Q |
38 |
ttgggaatgacgattttacgaatggaggttagttccaaagaggagagagaatctgcatgaagctctgagtgagtgtgagagcgttgttgaataaccactc |
137 |
Q |
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| T |
31796912 |
ttgggagtgacgatttta-gaatggaggttagttccaaagaggacagagaatctgcatgaagctctgagtgagtgtgagagcgttgttgaataaccactc |
31796814 |
T |
|
| Q |
138 |
catatgaatcgttgattcgtcttccttcgtcatcttcttctatgttctcnnnnnnnnaaaaccattcttctatgttctttactattcggttttggaaatt |
237 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31796813 |
catatggattgttgattcgtcttccttcgtcatcttcttctatgttctctcttttttaaaaccattcttctatgttctttactattcggttttggacatt |
31796714 |
T |
|
| Q |
238 |
gaaaatggtttattacaaaaaatttggcatatattcttacatgagtgaacttggacattaaaaagcctttcccatttttctcatttcattttacttcact |
337 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31796713 |
gaaaatggtttattacaaaaaatttgtcatagattcttacatgagtgaacttggacattaaaaagcctttcccatttttctcatttcattttccttcact |
31796614 |
T |
|
| Q |
338 |
atcggagtttgtctttcaaatggtgtcagaaacaagtcccacatttacatcttaacaaaaacgtgaagctttatatgaaaaaagaagtgtgaaataaata |
437 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31796613 |
atcggagtttgtctttcaaatggtgtcagaaacaagtcccacatttacaactcaacaaaaacgtgaagctttatatgaaaaaagaagtgtgaaataaata |
31796514 |
T |
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| Q |
438 |
ttgaagaataattgtcgaaattaaatttatttaacttccataatgttttcttcattttaaaga |
500 |
Q |
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| T |
31796513 |
ttgaagaataattgtcgaaattaaatttatttaacttccataatgttttcttcattttaaaga |
31796451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 585 - 710
Target Start/End: Complemental strand, 31796314 - 31796189
Alignment:
| Q |
585 |
gcttgataagtcttctaggacacaaaatgcttcgtaagtgtaagacaagcaaattgatacttatatagactttatttctttgttataagatgcaacaatt |
684 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31796314 |
gcttgataagtcttataggaaacaaaatgcttcgtaagtgtaagacaagcaaattgatacttatatagactttatttctttgttataagatgcaacaatt |
31796215 |
T |
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| Q |
685 |
aaaaacactttaagcttgtatttgtc |
710 |
Q |
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| T |
31796214 |
aaaaacactttaagcttgtatttgtc |
31796189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 31796998 - 31796965
Alignment:
| Q |
5 |
agcaatgcctatattcatctgctttcctttaact |
38 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31796998 |
agcaatgcctatattcatctgctttcctttaact |
31796965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 646 - 705
Target Start/End: Original strand, 52732966 - 52733025
Alignment:
| Q |
646 |
tatatagactttatttctttgttataagatgcaacaattaaaaacactttaagcttgtat |
705 |
Q |
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|||||| |||||||||||||||||||||||||| |||| |||||||||||||| |||||| |
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| T |
52732966 |
tatataaactttatttctttgttataagatgcaccaataaaaaacactttaagtttgtat |
52733025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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