View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13212_high_42 (Length: 214)
Name: NF13212_high_42
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_high_42 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 39728253 - 39728040
Alignment:
| Q |
1 |
tgttgcatgtttttgggaagatactcaatgacatagaggagtaaaagctaaatgtacttgcaagatgaagtgtaaaggcagaaaaactctagctatatgg |
100 |
Q |
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| T |
39728253 |
tgttgcatgtttttgggaagatactcaatgacatagaggagtaaaagctaaatgtacttgcaagatcaagtgtaaaggcagaaaaactctagctatatgg |
39728154 |
T |
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| Q |
101 |
ctcataggatctacgaggtgttatggatgaagatcatactccatgacctcgaaataaagtacaaagatcatatgaggctaatctgtctgtgataatactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39728153 |
ctcataggatctacgaggtgttatggatgaagatcatactccatgacctcgaaataaagtacaaagatcatatgaggctaatctgtctgtgataatactt |
39728054 |
T |
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| Q |
201 |
cttccattagcaat |
214 |
Q |
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|||||||||||||| |
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| T |
39728053 |
cttccattagcaat |
39728040 |
T |
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