View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13212_high_5 (Length: 706)
Name: NF13212_high_5
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 7e-91; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 514 - 695
Target Start/End: Complemental strand, 20139427 - 20139246
Alignment:
| Q |
514 |
aggatttgctacatcctctatgcataaatgcgccttgcaaaatggtagaccaaagtcttaacatctttagggttgtggttttcttgggatatcctggtat |
613 |
Q |
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| T |
20139427 |
aggatttgctacatcctctatgcataaatgcgccttgcaaaatggtagaccaaagtcttaacatctttagggttgtggttttcttcggatatcctggtat |
20139328 |
T |
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| Q |
614 |
gagaacatcatacttgggcaaaatattgagatcttgtcaacaataggtgtcctgttgtagttaacatgtagtgtcgttctct |
695 |
Q |
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| T |
20139327 |
gagaacatcatacttgggcaaaatatcgagatcttgtcaacaataggtgtccggttgtagttaacatgtagtgtcgttctct |
20139246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 20140091 - 20139921
Alignment:
| Q |
20 |
gtattcatgggagcacaattgaaggttactgcagcacacttcaacgttgattagttcatcagctagcatagattcatgaactgttgttctctttggtgtg |
119 |
Q |
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| T |
20140091 |
gtattcatgggagcacaattgaaggttactgcagcacacttcaacgttgat--------cagctagcagagattcatgaacaattgttctctttggtgtg |
20140000 |
T |
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| Q |
120 |
agcttccagtggccgcggttggcattggtgtgtggtagaatgttgtttcaagctggtggtggagtttgtattttgggtc |
198 |
Q |
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| T |
20139999 |
agcttccaatggccgcggttaccattggtgtgtggtagcatgttgtttcaagctggtgatggagtttgtattttgggtc |
20139921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 305 - 404
Target Start/End: Complemental strand, 20139887 - 20139786
Alignment:
| Q |
305 |
atctatctgctagtgcagagttgctgtatctttccgtacttt--ctggagtatgctttgtacttcaagtaaaccgttctaataaattcattttccctttc |
402 |
Q |
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| T |
20139887 |
atctatctgctagtgcagaattgttgtatctttccgcactttatctcgagtatgctttgtacttcaagtaaaccgttctaataaattcattttccctttc |
20139788 |
T |
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| Q |
403 |
at |
404 |
Q |
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|| |
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| T |
20139787 |
at |
20139786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 20139758 - 20139713
Alignment:
| Q |
432 |
ttggtttcaatttagttttcttaatcattgattcattctttataga |
477 |
Q |
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| T |
20139758 |
ttggtttcaatttagttttcttaatcatagattcattctttataga |
20139713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 20132864 - 20132798
Alignment:
| Q |
20 |
gtattcatgggagcacaattgaaggttactgcagcacacttcaacgttgattagttcatcagctagcat |
88 |
Q |
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| T |
20132864 |
gtattcatgggagcacaattgaaggttgttgcag--aacttcaacgttgataagctcattaactagcat |
20132798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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