View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13212_high_7 (Length: 441)

Name: NF13212_high_7
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13212_high_7
NF13212_high_7
[»] chr1 (8 HSPs)
chr1 (10-422)||(30170010-30170431)
chr1 (5-168)||(30144203-30144366)
chr1 (10-161)||(30172060-30172211)
chr1 (10-161)||(30187601-30187750)
chr1 (98-260)||(30169190-30169354)
chr1 (157-257)||(30171768-30171872)
chr1 (157-257)||(30187309-30187413)
chr1 (369-422)||(30144751-30144807)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 422
Target Start/End: Complemental strand, 30170431 - 30170010
Alignment:
Q  10 agaagaacctatggctgttcaagaggagttttcacaggtatctaacaggtctattctatgaaccactaatttaatgtttgccgtgatattttcctgaatt 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||  ||||||||||||||    
T  30170431 agaagaacctgtggctgttcaagaggagttttcacaggtatctaacacgtctattctatgtacctctaatttaatgtttgccgtattattttcctgaatt 30170332  T
Q  110 tggagtttaagttttgtgattttattcaaatttgaattgaatacactattaataaggtcaacatcattgaggtaactaagttttaaatacaaagttatat 209  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| |||||  |||||||| |||||||||||||||||||  |||||||||||||||||||    
T  30170331 tggagtttaagttgtgtgattttattcaactttgaattgaatatactatcgataaggtccacatcattgaggtaactaacctttaaatacaaagttatat 30170232  T
Q  210 ggttgattaattatcagcagaaaagtctttaatcaaatgcaatatgttatcaatg------ttgcagtcagatacgcctactacaccaacatcgacaagg 303  Q
    ||||||||| |||||||  |||||| |||||||||||||| ||||||||| ||||      |||||||||||||||||||| |||||||||| |||| |     
T  30170231 ggttgattagttatcagtggaaaagcctttaatcaaatgctatatgttatgaatgttaaaattgcagtcagatacgcctacaacaccaacattgacaggc 30170132  T
Q  304 agaggcgggggaaataatacaagggaacgtgattctggtggcagggagtaggaaaacatggatgctcttgatatcattac---tcatcatcaaataccac 400  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||   |||||||||| ||||||    
T  30170131 agaggcgggggcaataatacaaaggaacgtgattctggtggcagggataaggaaaacatggatgctcttgatatcattactcatcatcatcaagtaccac 30170032  T
Q  401 atgaattaaaaccagtagcccc 422  Q
    ||||||||||||||||||||||    
T  30170031 atgaattaaaaccagtagcccc 30170010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 30144366 - 30144203
Alignment:
Q  5 gagagagaagaacctatggctgttcaagaggagttttcacaggtatctaacaggtctattctatgaaccactaatttaatgtttgccgtgatattttcct 104  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  30144366 gagatagaagaacctgtggctgttcaagaggagttttcacaggtatctaacaggtctattctatgtacctctaatttaatgtttgccatgatattttcct 30144267  T
Q  105 gaatttggagtttaagttttgtgattttattcaaatttgaattgaatacactattaataaggtc 168  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30144266 gaatttagagtttaagttttgtgattttattcaaatttgaattgaataaactattaataaggtc 30144203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 30172211 - 30172060
Alignment:
Q  10 agaagaacctatggctgttcaagaggagttttcacaggtatctaacaggtctattctatgaaccactaatttaatgtttgccgtgatattttcctgaatt 109  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  30172211 agaagaacctgtggctgttcaagaggatttttcacaggtatctaacaggtctattctatgtacctctaatttaatgtttgccgtaatattttcctgaatt 30172112  T
Q  110 tggagtttaagttttgtgattttattcaaatttgaattgaatacactattaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  30172111 tggagtttaagttttgtgattttattcaaatttgaattgaataaacaattaa 30172060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 30187750 - 30187601
Alignment:
Q  10 agaagaacctatggctgttcaagaggagttttcacaggtatctaacaggtctattctatgaaccactaatttaatgtttgccgtgatattttcctgaatt 109  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||  |||||| |||| |||||||||||||||    
T  30187750 agaagaacctgtggctgttcaagaggagttttcacaggtatctaacaggtctattctatgtacctctaatt--atgttttccgtaatattttcctgaatt 30187653  T
Q  110 tggagtttaagttttgtgattttattcaaatttgaattgaatacactattaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  30187652 tggagtttaagttttgtgattttattcaaatttgaattgaataaacaattaa 30187601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 30169354 - 30169190
Alignment:
Q  98 ttttcctgaatttggagtttaagttttgtgattttattcaaatttgaattgaatacactattaataaggtcaacatcattgaggtaactaagttttaaat 197  Q
    ||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||| || |||||||||||| | ||||||   |||||||| |||||||     
T  30169354 ttttcctgaattttgaggttaagttttgtgattttatccaactttgaattgaataaacaattaataaggtccatatcattagagtaactaaattttaaac 30169255  T
Q  198 acaaagttatatgg--ttgattaattatcagcagaaaagtctttaatcaaatgcaatatgttatc 260  Q
    || |||||||||||  |||||||||||||||  |||||| ||| | || ||||  ||||||||||    
T  30169254 accaagttatatggcattgattaattatcagttgaaaagccttaattcgaatgttatatgttatc 30169190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 30171872 - 30171768
Alignment:
Q  157 attaataaggtcaacatcattgaggtaactaagttttaaatacaaagtt----atatggttgattaattatcagcagaaaagtctttaatcaaatgcaat 252  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||    |||||||||||||||||||||  |||||| |||||||||||||| ||    
T  30171872 attaataaggtccacatcattgaggtaactaaattttaaatacaaagttatatatatggttgattaattatcagtggaaaagcctttaatcaaatgctat 30171773  T
Q  253 atgtt 257  Q
    |||||    
T  30171772 atgtt 30171768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 30187413 - 30187309
Alignment:
Q  157 attaataaggtcaacatcattgaggtaactaagttttaaatacaaagtt----atatggttgattaattatcagcagaaaagtctttaatcaaatgcaat 252  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||    |||||||||||||||||||||  |||||| |||||||||||||| ||    
T  30187413 attaataaggtccacatcattgaggtaactaaattttaaatacaaagttatatatatggttgattaattatcagtggaaaagcctttaatcaaatgctat 30187314  T
Q  253 atgtt 257  Q
    |||||    
T  30187313 atgtt 30187309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 30144807 - 30144751
Alignment:
Q  369 tcttgatatcattactcat---catcaaataccacatgaattaaaaccagtagcccc 422  Q
    |||| ||||||||||||||   |||||| ||||||||||||||||||||||||||||    
T  30144807 tcttcatatcattactcatgatcatcaagtaccacatgaattaaaaccagtagcccc 30144751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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