View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13212_low_15 (Length: 332)
Name: NF13212_low_15
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 39 - 317
Target Start/End: Original strand, 29090710 - 29090989
Alignment:
| Q |
39 |
aggtaggtgtatataaagagagaaaatatgaccaattgattaatgagcaccatgcaggctacctttgtgtcaatttcttcttcctcttttgtgttgataa |
138 |
Q |
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| T |
29090710 |
aggtaggtgtatataaagagagaaaatatgaccaattgattaatgagcaccatgcaggctacctttgtgtcaatttcttcttcctcttttgtgttgataa |
29090809 |
T |
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| Q |
139 |
ttgttttgcta-cnnnnnnnttgttccacaatttcagctactgctgctttacacatgtatgatgagttggatttttggaagcttctgattatgaatgaga |
237 |
Q |
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| T |
29090810 |
ttgttttgctaacaaaaaaattgttccacaatttcagctactgctgctttacacatgtatgatgagttggatttttggaagcttctgattatgaatgaga |
29090909 |
T |
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| Q |
238 |
ggtattattattgtttgcaagagtaaatatggagaaaaatgtgagtacttttcacataaatggaggaggatcaccccact |
317 |
Q |
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| T |
29090910 |
ggtattattattgtttgcaagagtaaatatggagaaaaatgtgagtacttttcacataaatggaggaggatcaccccact |
29090989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 29087593 - 29087681
Alignment:
| Q |
45 |
gtgtatataaagagagaaaatatgaccaattgattaatgagcaccatgcaggctacctttgtgtcaatttcttcttcctcttttgtgtt |
133 |
Q |
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| T |
29087593 |
gtgtataaagagatagaaaataagccctattgattaataagcttcatgcaagctaccattgtgtcaatttcttcttcctcttttgtgtt |
29087681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 273
Target Start/End: Original strand, 29085111 - 29085219
Alignment:
| Q |
161 |
ttccacaatttcagctactgctgctttacacatgtatgat-gagttggatttttggaagcttctgattatgaatgagaggtattattattgtttgcaaga |
259 |
Q |
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| T |
29085111 |
ttccactatttcagttagtgctactttacacatgt-tgattgagttggatttttggaaggt---ggtta-gtgtgagtggtattattattgtttgaaaga |
29085205 |
T |
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| Q |
260 |
gtaaatatggagaa |
273 |
Q |
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| T |
29085206 |
gtaaatatggagaa |
29085219 |
T |
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