View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13212_low_17 (Length: 326)
Name: NF13212_low_17
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 14927149 - 14926855
Alignment:
| Q |
16 |
ataatgccacctagataataaaaatgaacacctctctggctgaaagttgcaccctaggccacaagcacgtgaatcacgaacaatgtagtcaaatctgcaa |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14927149 |
ataatgcgacctagataataaaaatgaacacctctctggctgaaagttgcaccctaggccacaagcacgtgaatcacgaacaatgtagtcaaatctgcaa |
14927050 |
T |
|
| Q |
116 |
attcttgaatttgttatggttctatgatcacaagattcggtatcaataatagtggcacatcaggaggaaaaaaggtgaaaagtatcaacttacttgtcaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14927049 |
attcttgaatttgttatggttctatgatcacgagattcggtatcaataacagtggcacatcaggaggaaaaaaggtgaaaagtatcaacttacttgtcaa |
14926950 |
T |
|
| Q |
216 |
cgtcaattccattgcgaccgtttgcaacaatatcatataagaacttcttctcctgttatgtaggagaaaattttgaagcaaatcagtataataac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14926949 |
cgtcaattccattgcgaccgtttgcaacaatatcatataagaacttcttctcctgttatgtaggagaaaattttgaagcaaatcagtataataac |
14926855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 1528352 - 1528297
Alignment:
| Q |
203 |
acttacttgtcaacgtcaattccattgcgaccgtttgcaacaatatcatataagaa |
258 |
Q |
| |
|
|||||||||||||| || |||||||| || || ||||||||||||||||| ||||| |
|
|
| T |
1528352 |
acttacttgtcaacatcgattccatttcgtccatttgcaacaatatcatacaagaa |
1528297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University