View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13212_low_22 (Length: 302)
Name: NF13212_low_22
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_low_22 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 33504655 - 33504956
Alignment:
| Q |
1 |
ttctaaaatcacatgaggcattgtagggtaaggtcaaccaaaatagagttaagaattgaattttttagggatttggatcctctaccacaccacggcatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33504655 |
ttctaaaatcacatgaggcattgtagggtaaggtcaaccaaaatagagttaagaattgaattttttagggatttggatcctctaccacaccacgacatac |
33504754 |
T |
|
| Q |
101 |
aaaccgttatatgatccaaatagagaatgtgtatttttaccatgtgctcgtcatcatcatagtaggtaggtctctcccaagcaagcataatatcatagga |
200 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33504755 |
aaatcgttatatgatctaaatagagaatgtgtatttttaccatgtgctcgtcatcatcatagtaggtaggtctctcccaagcaagcataatatcatagga |
33504854 |
T |
|
| Q |
201 |
taacctactaaatgaaccattattgatctcttcctctatgttacggcacatttgagttagagccttccccctaccaaattcaactaaatttttgcaatag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33504855 |
taacctactaaatgaaccattattgatctcttcctctatgttacggcacatttgagttagagccttcccactaccaaattcaactaaatttttgcaatag |
33504954 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
|
|| |
|
|
| T |
33504955 |
tt |
33504956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University