View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13212_low_26 (Length: 275)

Name: NF13212_low_26
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13212_low_26
NF13212_low_26
[»] chr7 (8 HSPs)
chr7 (46-258)||(37720402-37720613)
chr7 (178-252)||(28710370-28710444)
chr7 (183-252)||(27916414-27916483)
chr7 (179-252)||(42468925-42468998)
chr7 (153-225)||(7883007-7883078)
chr7 (171-258)||(46777310-46777398)
chr7 (203-253)||(8022213-8022263)
chr7 (192-252)||(15972129-15972188)
[»] chr1 (14 HSPs)
chr1 (144-250)||(19940545-19940650)
chr1 (175-250)||(46289778-46289853)
chr1 (178-258)||(1408636-1408717)
chr1 (172-219)||(26834732-26834779)
chr1 (144-252)||(4941143-4941248)
chr1 (145-246)||(6754060-6754161)
chr1 (205-250)||(4635751-4635796)
chr1 (166-258)||(34663127-34663220)
chr1 (172-252)||(45485012-45485093)
chr1 (181-253)||(17063885-17063957)
chr1 (172-235)||(48611702-48611766)
chr1 (178-228)||(42629020-42629070)
chr1 (192-247)||(43456684-43456740)
chr1 (144-188)||(48282856-48282899)
[»] chr3 (9 HSPs)
chr3 (143-252)||(36563082-36563190)
chr3 (143-252)||(36545124-36545232)
chr3 (180-257)||(25938595-25938672)
chr3 (182-252)||(50175379-50175449)
chr3 (173-252)||(8936054-8936134)
chr3 (174-258)||(29247329-29247413)
chr3 (172-247)||(26841276-26841350)
chr3 (180-252)||(42388763-42388836)
chr3 (153-201)||(27994433-27994480)
[»] scaffold0009 (1 HSPs)
scaffold0009 (175-258)||(106467-106550)
[»] chr2 (11 HSPs)
chr2 (172-258)||(6983154-6983239)
chr2 (174-252)||(43077176-43077254)
chr2 (184-252)||(3037436-3037504)
chr2 (173-226)||(33085338-33085390)
chr2 (172-258)||(27322766-27322853)
chr2 (200-237)||(15371436-15371473)
chr2 (156-198)||(45261912-45261954)
chr2 (178-252)||(9521042-9521118)
chr2 (171-207)||(15354354-15354390)
chr2 (173-225)||(24138958-24139010)
chr2 (192-252)||(25627424-25627484)
[»] chr8 (10 HSPs)
chr8 (170-247)||(7299859-7299935)
chr8 (167-252)||(15111839-15111925)
chr8 (142-252)||(885718-885829)
chr8 (187-252)||(7304949-7305013)
chr8 (173-252)||(40995795-40995875)
chr8 (173-258)||(9799224-9799310)
chr8 (199-252)||(12000142-12000195)
chr8 (175-247)||(27415232-27415304)
chr8 (175-235)||(7222824-7222883)
chr8 (146-225)||(43563852-43563931)
[»] scaffold0693 (1 HSPs)
scaffold0693 (175-258)||(1178-1261)
[»] chr4 (15 HSPs)
chr4 (175-258)||(53482404-53482487)
chr4 (175-252)||(4687339-4687416)
chr4 (192-246)||(37193616-37193670)
chr4 (147-258)||(19328838-19328949)
chr4 (192-252)||(27756493-27756553)
chr4 (172-258)||(43159872-43159958)
chr4 (175-247)||(20032944-20033017)
chr4 (175-252)||(21858819-21858898)
chr4 (175-252)||(21914682-21914761)
chr4 (170-245)||(34360917-34360993)
chr4 (179-252)||(25474632-25474706)
chr4 (203-252)||(3427889-3427938)
chr4 (178-245)||(2652915-2652983)
chr4 (171-258)||(24355758-24355846)
chr4 (182-258)||(38509945-38510021)
[»] scaffold0272 (1 HSPs)
scaffold0272 (172-250)||(6132-6211)
[»] chr5 (13 HSPs)
chr5 (176-252)||(24434140-24434218)
chr5 (172-235)||(14122941-14123005)
chr5 (192-252)||(19187163-19187223)
chr5 (172-258)||(36603668-36603755)
chr5 (143-252)||(21067639-21067748)
chr5 (180-252)||(39753297-39753370)
chr5 (172-227)||(28988362-28988418)
chr5 (173-258)||(38353618-38353704)
chr5 (131-188)||(8283075-8283131)
chr5 (192-257)||(36974067-36974131)
chr5 (203-252)||(38282520-38282569)
chr5 (191-247)||(1179976-1180032)
chr5 (175-258)||(24233193-24233277)
[»] scaffold0316 (1 HSPs)
scaffold0316 (147-252)||(1308-1413)
[»] chr6 (1 HSPs)
chr6 (204-252)||(6253522-6253570)
[»] scaffold0027 (1 HSPs)
scaffold0027 (215-257)||(14247-14289)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 46 - 258
Target Start/End: Original strand, 37720402 - 37720613
Alignment:
Q  46 cactgttcatatgagttttagggcatatttgaatcaacttatttaaccatatctattaacataagcactattgcactaactgtacaagatattttataaa 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37720402 cactgttcatatgagttttagggcatatttgaatcaacttatttaaccatatctattaacataagcactattgcactaactgtacaagatattttataaa 37720501  T
Q  146 agggtcttgttaaccgatgccccccagggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttga 245  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37720502 agggtcttgttaaccgatg-cccccagggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttgaggagttga 37720600  T
Q  246 cagcacacgttcc 258  Q
    ||||||| |||||    
T  37720601 cagcacatgttcc 37720613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 28710370 - 28710444
Alignment:
Q  178 tggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||||| ||||||||||| |||||||||||||||||||||||| |||||||| |||| |||||||  |||||||    
T  28710370 tggttaaagaaactaaaaaagaaagttttaaagtgaaaataacaatttttatgtttttgaggagttagcagcaca 28710444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 27916414 - 27916483
Alignment:
Q  183 aaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||||| |||||| ||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||    
T  27916414 aaggaaattaaaaacgaaagttttaaagtgaaaataacacattttacgtttttgaggagttgacagcaca 27916483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 42468925 - 42468998
Alignment:
Q  179 ggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    |||||||||||||||||||| || ||||||| |||||| ||||||||||||| | |||| |||| |||| ||||    
T  42468925 ggttaaggaaactaaaaaggtaaattttaaaatgaaaacaacactttttatgttattaaagagtggacatcaca 42468998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 7883007 - 7883078
Alignment:
Q  153 tgttaaccgatgccccccagggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacacttt 225  Q
    ||||||||| ||||||  || ||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||    
T  7883007 tgttaaccggtgcccca-agagcactggttaaggaagctaaaaaagaaagttttaaagtgaagataacccttt 7883078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 46777398 - 46777310
Alignment:
Q  171 agggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    |||||| ||||||||||||| |||||| ||||||||||   |||||||| |||||||||||||||| || ||||||  ||||| |||||    
T  46777398 agggcaatggttaaggaaaccaaaaagagaaagttttatgttgaaaatatcactttttatgcttttgagaagttgaatgcacaagttcc 46777310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 8022213 - 8022263
Alignment:
Q  203 ttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacac 253  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||| |||||    
T  8022213 ttttaaagtgaaaataacattttttatgtttttgaggagttgacatcacac 8022263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 15972129 - 15972188
Alignment:
Q  192 aaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    |||||||||| ||||||||||||||||| |||||||||  |||| |||| |||||| ||||    
T  15972129 aaaaaggaaa-ttttaaagtgaaaataatactttttatatttttgaggatttgacaacaca 15972188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 19940545 - 19940650
Alignment:
Q  144 aaagggtcttgttaaccgatgccccccagggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagtt 243  Q
    |||||||| ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19940545 aaagggtcatgttaaccggtgcccccg-gggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttgaggagtt 19940643  T
Q  244 gacagca 250  Q
    |||||||    
T  19940644 gacagca 19940650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 46289778 - 46289853
Alignment:
Q  175 cactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagca 250  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| | | ||||||||||    
T  46289778 cactggttaaagaaactaaaaagaaaagttttaaagtgaaaataacactttttatgtttttgaagtgttgacagca 46289853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 1408717 - 1408636
Alignment:
Q  178 tggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    |||||||||||||||||||  |||||||||||| ||||||||| |||||||||| |||| | ||||||||| |||| |||||    
T  1408717 tggttaaggaaactaaaaaaagaaagttttaaaatgaaaataaaactttttatgtttttgaagagttgacaacacaagttcc 1408636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 26834732 - 26834779
Alignment:
Q  172 gggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataa 219  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  26834732 gggcacgggttaatgaaactaaaaaagaaagttttaaagtgaaaataa 26834779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 252
Target Start/End: Original strand, 4941143 - 4941248
Alignment:
Q  144 aaagggtcttgttaaccgatgccccccagggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagtt 243  Q
    ||||| || ||||||||| ||||||   |||||||| ||||| ||  ||||||   || ||||||| | ||||||||||||||||||||||| |||||||    
T  4941143 aaaggatcatgttaaccggtgcccc---gggcactgattaagaaacttaaaaaaagaaattttaaaataaaaataacactttttatgcttttgaggagtt 4941239  T
Q  244 gacagcaca 252  Q
    |||| ||||    
T  4941240 gacaacaca 4941248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 6754060 - 6754161
Alignment:
Q  145 aagggtcttgttaaccgatgccccccagggcactggttaaggaaactaaaaaggaaagttttaaagtgaa-aataacactttttatgcttttaaggagtt 243  Q
    ||||||| |||||||||||||| ||  ||| ||||||||||||| |||||||   || ||||||| |||| |||||||||||| ||| |||| |||||||    
T  6754060 aagggtcatgttaaccgatgcctccg-gggtactggttaaggaacctaaaaaatgaaattttaaaatgaagaataacacttttaatgtttttgaggagtt 6754158  T
Q  244 gac 246  Q
    |||    
T  6754159 gac 6754161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 4635751 - 4635796
Alignment:
Q  205 ttaaagtgaaaataacactttttatgcttttaaggagttgacagca 250  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||    
T  4635751 ttaaagtgaaaataacattttttatgcttatgaggagttgacagca 4635796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 34663220 - 34663127
Alignment:
Q  166 cccccagggcactggttaaggaaactaa-aaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    ||||| || |||| |||||||||||||| ||| | |||||||||| ||||| ||||||||||||| ||||| |  ||||||||| ||| |||||    
T  34663220 cccccgggacactcgttaaggaaactaataaaagtaagttttaaaatgaaagtaacactttttatacttttgaaaagttgacagtacaagttcc 34663127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 45485012 - 45485093
Alignment:
Q  172 gggcactggttaaggaaactaaaaagga-aagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||||||||||||||| |||||||  | || ||||||| | |||||||||| |||||||||||| || |||||||| ||||    
T  45485012 gggcactggttaaggaacctaaaaaaaagaaattttaaaataaaaataacacattttatgctttttagaagttgacaacaca 45485093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 17063957 - 17063885
Alignment:
Q  181 ttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacac 253  Q
    ||||||||||||||||   || ||||||||| ||||||||| |||||||| |||| ||||||| ||| |||||    
T  17063957 ttaaggaaactaaaaaaagaaattttaaagtaaaaataacaatttttatgttttttaggagttaacaacacac 17063885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 48611702 - 48611766
Alignment:
Q  172 gggcactggttaaggaaact-aaaaaggaaagttttaaagtgaaaataacactttttatgctttt 235  Q
    |||||||||||||||||||| ||||| || ||||||||| | ||| ||||||||||||| |||||    
T  48611702 gggcactggttaaggaaactaaaaaaagatagttttaaaataaaagtaacactttttatactttt 48611766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 42629070 - 42629020
Alignment:
Q  178 tggttaaggaaactaaaaaggaaagttttaaagtgaaaataacacttttta 228  Q
    ||||||| ||||  |||| | ||||||||||||||||||||||||||||||    
T  42629070 tggttaaagaaatcaaaatgaaaagttttaaagtgaaaataacacttttta 42629020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 43456740 - 43456684
Alignment:
Q  192 aaaaaggaaagttttaaagtgaaaataacac-tttttatgcttttaaggagttgaca 247  Q
    ||||| ||||||| ||||||||||||||||| |||||||| |||| |||| ||||||    
T  43456740 aaaaaagaaagttataaagtgaaaataacacatttttatgtttttgaggaattgaca 43456684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 48282856 - 48282899
Alignment:
Q  144 aaagggtcttgttaaccgatgccccccagggcactggttaaggaa 188  Q
    |||||||||||||||||| || ||||| |||||||||||||||||    
T  48282856 aaagggtcttgttaaccggtg-cccccggggcactggttaaggaa 48282899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 36563190 - 36563082
Alignment:
Q  143 aaaagggtcttgttaaccgatgccccccagggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagt 242  Q
    ||||||||||||||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36563190 aaaagggtcttgttaaccggtgcccccg-gggcactggttaaagaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttgaggagt 36563092  T
Q  243 tgacagcaca 252  Q
    ||||| ||||    
T  36563091 tgacatcaca 36563082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 36545124 - 36545232
Alignment:
Q  143 aaaagggtcttgttaaccgatgccccccagggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagt 242  Q
    ||||||||||||||||||| |||||||  ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  36545124 aaaagggtcttgttaaccggtgcccccg-gggcactggttaaagaaactaaaaaggaaaattttaaagtgaaaataacactttttatgcttttgaggagt 36545222  T
Q  243 tgacagcaca 252  Q
    ||||| ||||    
T  36545223 tgacatcaca 36545232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 25938672 - 25938595
Alignment:
Q  180 gttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttc 257  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||| |||| ||||    
T  25938672 gttaagaaaactaaaaaggaaaattttaaagtgaaaataacactttttatgcttttgaggaattgacaacacaagttc 25938595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 50175449 - 50175379
Alignment:
Q  182 taaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||||||||||||||| || ||||||||| ||||||||| |||||||| |||| ||||||||||| ||||    
T  50175449 taaggaaactaaaaagggaaattttaaagtaaaaataacaatttttatgttttttaggagttgacaacaca 50175379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 8936054 - 8936134
Alignment:
Q  173 ggcactggttaaggaaact-aaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||||||||||||||||| ||||| | |||||||||| | ||| ||||||||||||||||||| | | ||||||||||||    
T  8936054 ggcactggttaaggaaacttaaaaaaggaagttttaaaataaaagtaacactttttatgcttttcaagggttgacagcaca 8936134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 29247413 - 29247329
Alignment:
Q  174 gcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    ||||| ||| ||||||||||||| | || ||||||||| ||||||||||||||||| ||||| ||||||||| | |||| |||||    
T  29247413 gcactagttgaggaaactaaaaaagtaaattttaaagttaaaataacactttttatacttttgaggagttgataacacaagttcc 29247329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 26841276 - 26841350
Alignment:
Q  172 gggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgaca 247  Q
    |||||||| ||||  ||| |||||||  || ||||||||| |||||||||||||||||| |||||| |||||||||    
T  26841276 gggcactgattaaataaattaaaaagataatttttaaagtaaaaataacactttttatgattttaa-gagttgaca 26841350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 42388836 - 42388763
Alignment:
Q  180 gttaaggaaactaaaaagga-aagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    |||||| ||||||||||  | |||||||||  |||||||||||||||||||| |||| |  |||||||||||||    
T  42388836 gttaagaaaactaaaaaaaagaagttttaagatgaaaataacactttttatgtttttgaaaagttgacagcaca 42388763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 27994480 - 27994433
Alignment:
Q  153 tgttaaccgatgccccccagggcactggttaaggaaactaaaaaggaaa 201  Q
    |||||||||||||||||  |||||||||||||||| |||||||| ||||    
T  27994480 tgttaaccgatgcccccg-gggcactggttaaggatactaaaaaagaaa 27994433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 106467 - 106550
Alignment:
Q  175 cactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  || |||||| |||||| |||||    
T  106467 cactggttaaggaaactaaaaaagaaagttttaaagtgaaaataacactttttatgctttcgagaagttgatagcacaagttcc 106550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 6983154 - 6983239
Alignment:
Q  172 gggcactggttaaggaaactaaaaa-ggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    ||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  6983154 gggcactggttaaggaaactaaaaaaggaaa--tttaaagtgaaaataacactttttatgctttttaggagttgacaccacaagttcc 6983239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 43077176 - 43077254
Alignment:
Q  174 gcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    |||||||||||| |||||| ||| |||| ||||||| |||||||||||  |||||||||||| ||||||||| ||||||    
T  43077176 gcactggttaagaaaactataaaagaaaattttaaattgaaaataacatattttatgcttttgaggagttgatagcaca 43077254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 3037504 - 3037436
Alignment:
Q  184 aggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||||||||||| |||| ||||||| | ||| ||||||||||||| ||||||||||||||||| ||||    
T  3037504 aggaaactaaaaaagaaaattttaaaatcaaagtaacactttttatacttttaaggagttgacaacaca 3037436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 33085338 - 33085390
Alignment:
Q  173 ggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttt 226  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  33085338 ggcactggttaaggaaactaaaaaataaa-ttttaaagtgaaaataacactttt 33085390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 27322853 - 27322766
Alignment:
Q  172 gggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    |||||||||||||||||||||||||  | |||||  ||| | ||| ||| ||||||||||||||| | |||||||||||||| |||||    
T  27322853 gggcactggttaaggaaactaaaaaaaggaagttcgaaaataaaagtaatactttttatgcttttcaagagttgacagcacaagttcc 27322766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 15371436 - 15371473
Alignment:
Q  200 aagttttaaagtgaaaataacactttttatgcttttaa 237  Q
    |||||||||||||||||||||||||||||| |||||||    
T  15371436 aagttttaaagtgaaaataacactttttatccttttaa 15371473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 45261912 - 45261954
Alignment:
Q  156 taaccgatgccccccagggcactggttaaggaaactaaaaagg 198  Q
    |||||| ||||||||||||||||||||||||| | ||||||||    
T  45261912 taaccggtgccccccagggcactggttaaggataataaaaagg 45261954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 9521042 - 9521118
Alignment:
Q  178 tggttaaggaaactaaaaag--gaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    |||||||| ||||||||||   |||||||||||| | ||| ||||||||||||| ||||| |  |||||||||||||    
T  9521042 tggttaagaaaactaaaaaaatgaaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcaca 9521118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 15354354 - 15354390
Alignment:
Q  171 agggcactggttaaggaaactaaaaaggaaagtttta 207  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  15354354 agggcaatggttaaggaaactaaaaaagaaagtttta 15354390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 24139010 - 24138958
Alignment:
Q  173 ggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacacttt 225  Q
    ||||| |||||||| || ||||  |||||||||||||||||||||||| ||||    
T  24139010 ggcaccggttaaggtaattaaaggggaaagttttaaagtgaaaataactcttt 24138958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 25627484 - 25627424
Alignment:
Q  192 aaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    |||||||||| ||| ||| | | |||||||||||||||| |||| ||||||||||| ||||    
T  25627484 aaaaaggaaattttgaaattaagaataacactttttatgtttttgaggagttgacaacaca 25627424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 7299859 - 7299935
Alignment:
Q  170 cagggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgaca 247  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||  |||||||||||| |||||||||||    
T  7299859 cagggcactggttaaggaaactaaaaaggaaa-ttttaaattgaaaataacatattttatgcttttgaggagttgaca 7299935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 15111839 - 15111925
Alignment:
Q  167 ccccagggcactggttaaggaaactaaaaagga-aagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    |||| |||||||||||||||||||||||||  | || ||||||| |||||||||||||||||||  |||| ||||||||||| ||||    
T  15111839 cccccgggcactggttaaggaaactaaaaaaaagaaattttaaaatgaaaataacactttttatattttttaggagttgacaacaca 15111925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 885829 - 885718
Alignment:
Q  142 taaaagggtcttgttaaccgatgccccccagggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataaca--ctttttatgcttttaagg 239  Q
    |||||||||| ||||||||| || || |  ||||| ||||||||||| ||||||| | || ||||||| |||||||||||   ||||||| |||||||||    
T  885829 taaaagggtcatgttaaccggtgtcctcg-gggcagtggttaaggaacctaaaaaaggaaattttaaaatgaaaataacattttttttattcttttaagg 885731  T
Q  240 agttgacagcaca 252  Q
    |||||||| ||||    
T  885730 agttgacaacaca 885718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 7304949 - 7305013
Alignment:
Q  187 aaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||||||||||||| |||||||||||||||||||  |||| ||||||| ||||||||||| ||||    
T  7304949 aaactaaaaaggaaa-ttttaaagtgaaaataacatattttctgcttttgaggagttgacaacaca 7305013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 40995795 - 40995875
Alignment:
Q  173 ggcactggttaaggaaactaa-aaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||| |||||| |||||||| ||| | |||||||||| |||||||||||||||||||| |||| | ||||||||| ||||    
T  40995795 ggcaccggttaatgaaactaagaaaaggaagttttaaaatgaaaataacactttttatgtttttgaagagttgacaacaca 40995875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 9799224 - 9799310
Alignment:
Q  173 ggcactggttaaggaaactaaaaa-ggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    ||||||||||||||||||||||||  |||||| ||||| | ||  ||||||||||||| ||||| | ||||||||| |||| |||||    
T  9799224 ggcactggttaaggaaactaaaaattgaaagtcttaaaataaaggtaacactttttatacttttcaagagttgacaacacaagttcc 9799310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 12000142 - 12000195
Alignment:
Q  199 aaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||||||||||||||||||| | ||||||||||||| ||  ||||||||||||    
T  12000142 aaagttttaaagtgaaaataatattttttatgcttttgagatgttgacagcaca 12000195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 27415232 - 27415304
Alignment:
Q  175 cactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgaca 247  Q
    ||||| |||||||||||||||| | || ||||||||| |||||||||||||| ||  |||| || ||||||||    
T  27415232 cactgattaaggaaactaaaaaaggaaattttaaagtaaaaataacacttttgatatttttgagaagttgaca 27415304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 7222824 - 7222883
Alignment:
Q  175 cactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgctttt 235  Q
    |||| ||||||||||||||||| |||| ||||||| | ||| |||||||||||||| ||||    
T  7222824 cactagttaaggaaactaaaaa-gaaaattttaaaataaaagtaacactttttatgttttt 7222883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 43563852 - 43563931
Alignment:
Q  146 agggtcttgttaaccgatgccccccagggcactggttaaggaaa-ctaaaaaggaaagttttaaagtgaaaataacacttt 225  Q
    |||||||||||||||| ||| ||| |||  |||||||||||||| | ||||| |||||||||||| ||||||  |||||||    
T  43563852 agggtcttgttaaccggtgcacccgaggt-actggttaaggaaatcaaaaaaagaaagttttaaattgaaaaatacacttt 43563931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0693 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0693
Description:

Target: scaffold0693; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 1261 - 1178
Alignment:
Q  175 cactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||||||| ||||||  | ||||||||||    
T  1261 cactggttaaggaaattaaaaaggaaggttttaaagtaaaaataacattttttatgcttttaatgagttgctatcacacgttcc 1178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 53482487 - 53482404
Alignment:
Q  175 cactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||||| ||||||||||||||| ||||||  | ||||||||||    
T  53482487 cactggttaaggaaattaaaaaggaaggttttaaagtaaaaataacattttttatgcttttaatgagttgctatcacacgttcc 53482404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 4687339 - 4687416
Alignment:
Q  175 cactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||||||||| ||||||||||  ||||||||||||| ||||||||||||||||||||||| || |||||| ||||||    
T  4687339 cactggttaagaaaactaaaaaacaaagttttaaagtaaaaataacactttttatgcttttgagaagttgatagcaca 4687416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 37193670 - 37193616
Alignment:
Q  192 aaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgac 246  Q
    ||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  37193670 aaaaaagaaagttttaaagtgaaaataacactttttatgcatttgaggagttgac 37193616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 19328949 - 19328838
Alignment:
Q  147 gggtcttgttaaccgatgccccccagggcactggttaaggaaactaaaaagga-aagttttaaagtgaaaataacactttttatgcttttaaggagttga 245  Q
    ||||| ||||||||| ||||||   |||||||||||||||||||||||||    |||||||||| ||||| ||||||||||||| ||||| | |||||||    
T  19328949 gggtcatgttaaccggtgccccgg-gggcactggttaaggaaactaaaaaaatgaagttttaaaatgaaagtaacactttttatacttttgaagagttga 19328851  T
Q  246 cagcacacgttcc 258  Q
     |||||| |||||    
T  19328850 tagcacaagttcc 19328838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 27756553 - 27756493
Alignment:
Q  192 aaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||| |||| ||||||| ||||||||||||||||||||||||| | ||||||||| ||||    
T  27756553 aaaaaagaaacttttaaaatgaaaataacactttttatgcttttgaagagttgacaacaca 27756493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 43159958 - 43159872
Alignment:
Q  172 gggcactggttaaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    ||||| ||||||| ||| |||||||   || ||||||| |||||||||||||||||| | |||| ||||||||||| |||| |||||    
T  43159958 gggcattggttaaagaacctaaaaaaagaaattttaaaatgaaaataacactttttaagtttttgaggagttgacaacacaagttcc 43159872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 20033017 - 20032944
Alignment:
Q  175 cactggttaaggaaactaaaaaggaaagttttaaagtgaa-aataacactttttatgcttttaaggagttgaca 247  Q
    |||||||||| ||| ||||||| |||| ||||||| |||| |||||||||||||||| |||| | |||||||||    
T  20033017 cactggttaaagaacctaaaaaagaaaattttaaaatgaagaataacactttttatgtttttgaagagttgaca 20032944  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 21858819 - 21858898
Alignment:
Q  175 cactggttaaggaaactaaaaaggaaagttttaaagtgaaaataaca--ctttttatgcttttaaggagttgacagcaca 252  Q
    |||||||||||||| ||||||| | || ||||||| |||||||||||   |||||||| |||| ||||||||||| ||||    
T  21858819 cactggttaaggaatctaaaaaaggaaattttaaaatgaaaataacattttttttatgtttttgaggagttgacaacaca 21858898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 21914682 - 21914761
Alignment:
Q  175 cactggttaaggaaactaaaaaggaaagttttaaagtgaaaataaca--ctttttatgcttttaaggagttgacagcaca 252  Q
    |||||||||||||| ||||||| | || ||||||| |||||||||||   |||||||| |||| ||||||||||| ||||    
T  21914682 cactggttaaggaatctaaaaaaggaaattttaaaatgaaaataacattttttttatgtttttgaggagttgacaacaca 21914761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 34360993 - 34360917
Alignment:
Q  170 cagggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttaaggagttga 245  Q
    ||||||| ||||||||||||| |||||  |||||||||||  |||||||| |||||||||  ||||| |||||||||    
T  34360993 cagggcaatggttaaggaaacaaaaaaaagaaagttttaagttgaaaataccactttttagacttttgaggagttga 34360917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 25474632 - 25474706
Alignment:
Q  179 ggttaaggaaactaaaa-aggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    |||||| |||||||||| |  ||| ||||||| ||||||||||| ||||||||||||| | ||||||||| ||||    
T  25474632 ggttaaagaaactaaaagaataaaattttaaaatgaaaataacattttttatgcttttgaagagttgacaacaca 25474706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 3427938 - 3427889
Alignment:
Q  203 ttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||||| |||||||||||||||||||| |||| | ||||||||| ||||    
T  3427938 ttttaaaatgaaaataacactttttatgtttttgaagagttgacaacaca 3427889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 2652915 - 2652983
Alignment:
Q  178 tggttaaggaaact-aaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttga 245  Q
    |||||||||||||| ||||| |||| ||||||| ||||||| | |||||||||| |||| | |||||||    
T  2652915 tggttaaggaaactaaaaaaagaaaattttaaaatgaaaatgatactttttatgtttttgaagagttga 2652983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 24355758 - 24355846
Alignment:
Q  171 agggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    |||||| ||||||||||||| |||||| |||||||||||  ||||||||  | ||||||  ||||| |||||||||  ||||| |||||    
T  24355758 agggcaatggttaaggaaaccaaaaagagaaagttttaagttgaaaatacaattttttagacttttgaggagttgaatgcacaagttcc 24355846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 38510021 - 38509945
Alignment:
Q  182 taaggaaactaaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    ||||||| |||||||   || ||||||| | |||||||||||||| || ||||| ||||||||||| |||| |||||    
T  38510021 taaggaacctaaaaaaagaaattttaaaataaaaataacacttttcatacttttgaggagttgacaacacaagttcc 38509945  T

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Target: scaffold0272 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 6211 - 6132
Alignment:
Q  172 gggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagca 250  Q
    |||||| ||||||||||||||||||  |||||||||||| ||||| |||||||||||||| |||| |  |||||||||||    
T  6211 gggcaccggttaaggaaactaaaaaaagaaagttttaaaatgaaagtaacactttttatgtttttgaaaagttgacagca 6132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 24434218 - 24434140
Alignment:
Q  176 actggttaaggaaactaaaaaggaaagttttaaagtgaaaataaca--ctttttatgcttttaaggagttgacagcaca 252  Q
    |||||||||||||| |||||||||| |||||||||| |||||||||   ||||||||| ||| ||||||||||| ||||    
T  24434218 actggttaaggaaattaaaaaggaatgttttaaagtaaaaataacattttttttatgcgttttaggagttgacaacaca 24434140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 14123005 - 14122941
Alignment:
Q  172 gggcactggttaaggaaactaaaa-aggaaagttttaaagtgaaaataacactttttatgctttt 235  Q
    |||||||||||||||||||||||| | | |||||||||| ||||| ||||||||| |||||||||    
T  14123005 gggcactggttaaggaaactaaaagaaggaagttttaaaatgaaagtaacactttatatgctttt 14122941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 19187223 - 19187163
Alignment:
Q  192 aaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||| |||||||||||| |||||| |||||||||||||||||| | ||||||||| ||||    
T  19187223 aaaaaagaaagttttaaaatgaaaacaacactttttatgcttttgaagagttgacaacaca 19187163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 36603668 - 36603755
Alignment:
Q  172 gggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    ||||||| ||||||||| |||||||  |||||||||||| ||||| | |||||||||||| |||| | ||||||||| |||| |||||    
T  36603668 gggcactagttaaggaacctaaaaaaagaaagttttaaaatgaaagtgacactttttatgtttttgaagagttgacaacacaagttcc 36603755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 252
Target Start/End: Complemental strand, 21067748 - 21067639
Alignment:
Q  143 aaaagggtcttgttaaccgatgccccccagggcactggttaaggaaact-aaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggag 241  Q
    |||| |||| |||||||||||||| ||  | |||||||||||||||||| ||||| | |||||||||| ||||| ||  ||||||||||||||| | |||    
T  21067748 aaaatggtcatgttaaccgatgcctccg-gtgcactggttaaggaaactcaaaaaaggaagttttaaaatgaaagtactactttttatgcttttgaagag 21067650  T
Q  242 ttgacagcaca 252  Q
     ||||| ||||    
T  21067649 atgacaacaca 21067639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 39753297 - 39753370
Alignment:
Q  180 gttaaggaaactaa-aaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    |||||||||||||| |||   |||||||||| ||||| ||| ||||||||||||||| | ||||||||||||||    
T  39753297 gttaaggaaactaagaaaatgaagttttaaaatgaaagtaatactttttatgcttttgaagagttgacagcaca 39753370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 28988362 - 28988418
Alignment:
Q  172 gggcactggttaaggaaact--aaaaaggaaagttttaaagtgaaaataacacttttt 227  Q
    ||||||||||||||||||||  |||||||||| ||||||| ||||| |||||||||||    
T  28988362 gggcactggttaaggaaactaaaaaaaggaaa-ttttaaaatgaaagtaacacttttt 28988418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 38353618 - 38353704
Alignment:
Q  173 ggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    |||| |||||||||||| ||||||  |||||||||||  |||||||| |||||||||  ||||| |||||||||  ||||| |||||    
T  38353618 ggcaatggttaaggaaattaaaaaaagaaagttttaagttgaaaataccactttttagacttttgaggagttgaatgcacaagttcc 38353704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 8283075 - 8283131
Alignment:
Q  131 aagatattttataaaagggtcttgttaaccgatgccccccagggcactggttaaggaa 188  Q
    |||||||||||  ||||||| ||| ||||||||| |||||||| ||||||||||||||    
T  8283075 aagatattttagtaaagggtgttgctaaccgatg-cccccaggacactggttaaggaa 8283131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 36974067 - 36974131
Alignment:
Q  192 aaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttc 257  Q
    |||||||||| ||||||| |||||||||||| ||||||| |||| | ||||||||| |||| ||||    
T  36974067 aaaaaggaaa-ttttaaaatgaaaataacacattttatgtttttgaagagttgacaacacaagttc 36974131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 38282569 - 38282520
Alignment:
Q  203 ttttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    ||||||| |||||||||||||||||||  |||||| ||||||||| ||||    
T  38282569 ttttaaaatgaaaataacactttttatatttttaaagagttgacaacaca 38282520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 1180032 - 1179976
Alignment:
Q  191 taaaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgaca 247  Q
    |||||| |||| ||||||| | |||||||||||||||||| |||| || ||||||||    
T  1180032 taaaaaagaaaattttaaaataaaaataacactttttatgttttttagaagttgaca 1179976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 24233277 - 24233193
Alignment:
Q  175 cactggttaaggaaacta-aaaaggaaagttttaaagtgaaaataacactttttatgcttttaaggagttgacagcacacgttcc 258  Q
    |||||||||||||||||| |||| | |||||| ||  ||||| |||||||||||||  |||| |  ||||||||||||| |||||    
T  24233277 cactggttaaggaaactaaaaaaaggaagtttgaagatgaaagtaacactttttatatttttgaaaagttgacagcacaagttcc 24233193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 252
Target Start/End: Complemental strand, 1413 - 1308
Alignment:
Q  147 gggtcttgttaaccgatgccccccagggcactggttaaggaaactaaaaag-gaaagttttaaagtgaaaataacactttttatgcttttaaggagttga 245  Q
    ||||| ||||||||| ||||||   |||||| || ||||||| |||||||  |||| ||||||| ||||||||||| ||||||||||||| | |||||||    
T  1413 gggtcatgttaaccggtgcccctg-gggcacgggctaaggaacctaaaaaaagaaatttttaaaatgaaaataacattttttatgcttttgatgagttga 1315  T
Q  246 cagcaca 252  Q
    || ||||    
T  1314 caacaca 1308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 6253570 - 6253522
Alignment:
Q  204 tttaaagtgaaaataacactttttatgcttttaaggagttgacagcaca 252  Q
    |||||||||||||||| ||||||||| ||||| || |||||||||||||    
T  6253570 tttaaagtgaaaataatactttttattcttttgagtagttgacagcaca 6253522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 14289 - 14247
Alignment:
Q  215 aataacactttttatgcttttaaggagttgacagcacacgttc 257  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||    
T  14289 aataacactttttatgcttttgaggagttgacaacacaagttc 14247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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