View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13212_low_28 (Length: 265)

Name: NF13212_low_28
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13212_low_28
NF13212_low_28
[»] chr3 (9 HSPs)
chr3 (10-246)||(5965865-5966101)
chr3 (64-238)||(11497446-11497620)
chr3 (64-233)||(11490984-11491153)
chr3 (68-246)||(4130047-4130225)
chr3 (63-235)||(2919621-2919793)
chr3 (64-238)||(5051994-5052168)
chr3 (69-246)||(911477-911654)
chr3 (162-241)||(4060379-4060458)
chr3 (162-241)||(4079988-4080067)
[»] scaffold0603 (1 HSPs)
scaffold0603 (10-246)||(4654-4890)
[»] chr8 (1 HSPs)
chr8 (64-246)||(18388124-18388306)
[»] chr1 (3 HSPs)
chr1 (64-245)||(17311845-17312026)
chr1 (156-241)||(13933562-13933647)
chr1 (110-151)||(14005101-14005142)
[»] chr5 (1 HSPs)
chr5 (79-214)||(16446921-16447056)
[»] chr4 (1 HSPs)
chr4 (64-227)||(5988620-5988783)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 5965865 - 5966101
Alignment:
Q  10 catcatcacaacacaggatgaaagggttgcactatcaatacaaacctttggactatccatgcaaacctttctttctgtccactacttgagacctctagaa 109  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||| | |||    
T  5965865 catcatcacaacacaggatgaaaaagttgcactatcaatacaaacctttgcactacccatgcgaacctttctttctgtccactacttgacacctttggaa 5965964  T
Q  110 agtgaagattgctggactttacttgccggacatgcatttggagattgtaacgaccaacaacgatccaatctagaggaaattggcagaggaattgcaaata 209  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||   |||||||||||  | |||||||||||| ||||||||||||| | |||||||||    
T  5965965 agtgaagattgctggtctttacttgccgggcatgcatttggagaacataacgaccaacgccaatccaatctagaagaaattggcagagaagttgcaaata 5966064  T
Q  210 aatgttatggatcaccatttgctgcagtagcacttgg 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  5966065 aatgttatggatcaccatttgctgcagtagcacttgg 5966101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 11497620 - 11497446
Alignment:
Q  64 atccatgcaaacctttctttctgtccactacttgagacctctagaaagtgaagattgctggactttacttgccggacatgcatttggagattgtaacgac 163  Q
    |||||||||||||||| ||| ||||||||| |||| |||||| ||||| |||||||| ||| ||||| ||||| | |||||||||||||  ||||| |||    
T  11497620 atccatgcaaacctttttttatgtccactatttgaaacctctggaaagcgaagattgttggtctttagttgccaggcatgcatttggagcatgtaatgac 11497521  T
Q  164 caacaacgatccaatctagaggaaattggcagaggaattgcaaataaatgttatggatcaccatttgctgcagta 238  Q
     ||||||||||||||||||| ||||||||||| | ||||||||| |||||||| ||   |||||| |||||||||    
T  11497520 aaacaacgatccaatctagaagaaattggcagggaaattgcaaaaaaatgttacggtataccattagctgcagta 11497446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 233
Target Start/End: Complemental strand, 11491153 - 11490984
Alignment:
Q  64 atccatgcaaacctttctttctgtccactacttgagacctctagaaagtgaagattgctggactttacttgccggacatgcatttggagattgtaacgac 163  Q
    |||||||||||| |||  || ||||||||| ||||||||||||||||| |||||||| ||| ||||| ||||| ||||||||||||| |  ||||||||     
T  11491153 atccatgcaaactttttcttatgtccactatttgagacctctagaaagcgaagattgttggtctttagttgccagacatgcatttggggcatgtaacgag 11491054  T
Q  164 caacaacgatccaatctagaggaaattggcagaggaattgcaaataaatgttatggatcaccatttgctg 233  Q
    |||||||||||||||||||| ||| | ||||    ||||||||| |||||| |||||| |||||| ||||    
T  11491053 caacaacgatccaatctagaagaagtaggcaagaaaattgcaaaaaaatgtgatggattaccattagctg 11490984  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 246
Target Start/End: Original strand, 4130047 - 4130225
Alignment:
Q  68 atgcaaacctttctttctgtccactacttgagacctctagaaagtgaagattgctggactttacttgccggacatgcatttggagattgtaacgaccaac 167  Q
    ||||||||||||||||||||||||   || ||| || | ||||  |||||||| ||| ||||||||||| |||||||||||| |    ||||| ||||||    
T  4130047 atgcaaacctttctttctgtccaccgtttaagatctttggaaaaggaagattgttggtctttacttgccagacatgcatttgtaacaagtaactaccaac 4130146  T
Q  168 aacgatccaatctagaggaaattggcagaggaattgcaaataaatgttatggatcaccatttgctgcagtagcacttgg 246  Q
    ||||||||||||||||  ||||||| |||| |||||| || |||||| |||| | |||||| |||||| ||||||||||    
T  4130147 aacgatccaatctagaaaaaattggtagagaaattgccaaaaaatgtgatgggttaccattagctgcaatagcacttgg 4130225  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 235
Target Start/End: Original strand, 2919621 - 2919793
Alignment:
Q  63 tatccatgcaaacctttctttctgtccactacttgagacctctagaaagtgaagattgctggactttacttgccggacatgcatttggag-attgtaacg 161  Q
    ||||||||||||||||| ||| |||||||||  |||||| ||| ||||  |||||||||||| ||||| ||||| ||||||||||||||| ||||  ||     
T  2919621 tatccatgcaaacctttttttatgtccactatatgagacatctggaaacagaagattgctggtctttagttgccagacatgcatttggagcattg-gaca 2919719  T
Q  162 accaacaacgatccaatctagaggaaattggcagaggaattgcaaataaatgttatggatcaccatttgctgca 235  Q
    ||||| |||| ||  ||||||| |||||||| |||| ||||||||| |||||| | |||| |||||| ||||||    
T  2919720 accaaaaacggtctgatctagaagaaattggtagagaaattgcaaaaaaatgtgacggattaccattagctgca 2919793  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 5051994 - 5052168
Alignment:
Q  64 atccatgcaaacctttctttctgtccactacttgagacctctagaaagtgaagattgctggactttacttgccggacatgcatttggagattgtaacgac 163  Q
    ||||||| ||| |||| ||| ||||||||| ||||||||| | ||||| |||||||||||| || || ||||| ||||||||||||||    ||||| ||    
T  5051994 atccatggaaagctttttttatgtccactatttgagacctttggaaagcgaagattgctggtctatagttgccagacatgcatttggaccacgtaactac 5052093  T
Q  164 caacaacgatccaatctagaggaaattggcagaggaattgcaaataaatgttatggatcaccatttgctgcagta 238  Q
    ||| ||| ||| ||||| || |||||||| ||   ||||||| | || ||| |||||| |||||| |||||||||    
T  5052094 caaaaactatcaaatcttgaagaaattggaaggaaaattgcagaaaagtgtgatggattaccattagctgcagta 5052168  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 246
Target Start/End: Complemental strand, 911654 - 911477
Alignment:
Q  69 tgcaaacctttctttctgtccactacttgagacctctagaaagtgaagattgctggactttacttgccggacatgcatttggagattgtaacgaccaaca 168  Q
    |||||||||||||| |  ||||||| |||| |||| ||| |||||| || || ||| |||||||||||  ||||||||||||||  |||||   || |||    
T  911654 tgcaaacctttcttccaatccactatttgacacctataggaagtgacgagtgttggtctttacttgccaaacatgcatttggagcatgtaatttccgaca 911555  T
Q  169 acgatccaatctagaggaaattggcagaggaattgcaaataaatgttatggatcaccatttgctgcagtagcacttgg 246  Q
    ||| ||||| |||||    ||||||| || |||  | |  |||||| |||||| |||||| |||||||||||||||||    
T  911554 acggtccaacctagaattgattggcaaagaaatctctacgaaatgtgatggattaccattagctgcagtagcacttgg 911477  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 4060458 - 4060379
Alignment:
Q  162 accaacaacgatccaatctagaggaaattggcagaggaattgcaaataaatgttatggatcaccatttgctgcagtagca 241  Q
    |||||||||||||||||||| |   ||||||||||| |||| |||| |||||| |||| | |||||| |||||| |||||    
T  4060458 accaacaacgatccaatctaaaaacaattggcagagaaatttcaaaaaaatgtgatggtttaccattagctgcaatagca 4060379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 4080067 - 4079988
Alignment:
Q  162 accaacaacgatccaatctagaggaaattggcagaggaattgcaaataaatgttatggatcaccatttgctgcagtagca 241  Q
    |||||||||||||||||||| |   ||||||||||| |||| |||| |||||| |||| | |||||| |||||| |||||    
T  4080067 accaacaacgatccaatctaaaaacaattggcagagaaatttcaaaaaaatgtgatggtttaccattagctgcaatagca 4079988  T

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Target: scaffold0603 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 4890 - 4654
Alignment:
Q  10 catcatcacaacacaggatgaaagggttgcactatcaatacaaacctttggactatccatgcaaacctttctttctgtccactacttgagacctctagaa 109  Q
    |||||||||||||| |||| |||  ||||||||||||||||||||| |||  ||  ||||||||||||||||||||||||||||||||| |||||| |||    
T  4890 catcatcacaacaccggataaaaaagttgcactatcaatacaaaccattgcccttcccatgcaaacctttctttctgtccactacttgacacctctggaa 4791  T
Q  110 agtgaagattgctggactttacttgccggacatgcatttggagattgtaacgaccaacaacgatccaatctagaggaaattggcagaggaattgcaaata 209  Q
    ||||||||||||||| |||||||||| |||| |||||||||||  |||||||||||||| | |||||||||||| |||||||||| || |||||| ||||    
T  4790 agtgaagattgctggtctttacttgctggacttgcatttggagcatgtaacgaccaacatcaatccaatctagaagaaattggcaaagaaattgctaata 4691  T
Q  210 aatgttatggatcaccatttgctgcagtagcacttgg 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  4690 aatgttatggatcaccatttgctgcagtagcacttgg 4654  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 246
Target Start/End: Original strand, 18388124 - 18388306
Alignment:
Q  64 atccatgcaaacctttctttctgtccactacttgagacctctagaaagtgaagattgctggactttacttgccggacatgcatttggagattgtaacgac 163  Q
    ||||||||||||||||| ||| |||||||| ||||||||||| || ||||||||||||||| ||||| ||||| ||||||||||| ||| ||| ||| ||    
T  18388124 atccatgcaaacctttcattcggtccactatttgagacctctggagagtgaagattgctggtctttagttgccagacatgcatttagagcttggaacaac 18388223  T
Q  164 caacaacgatccaatctagaggaaattggcagaggaattgcaaataaatgttatggatcaccatttgctgcagtagcacttgg 246  Q
    || ||||  ||  ||||||| |||||||| |||| ||||||||| |||||||| |||  |||||| |||||| || |||||||    
T  18388224 cagcaacagtctgatctagaagaaattggtagagaaattgcaaaaaaatgttacggaataccattagctgcaatatcacttgg 18388306  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 245
Target Start/End: Original strand, 17311845 - 17312026
Alignment:
Q  64 atccatgcaaacctttctttctgtccactacttgagacctctagaaagtgaagattgctggactttacttgccggacatgcatttggagattgtaacgac 163  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||||| |||||||| ||| ||||| ||||| ||||||||||| ||   |||||| ||    
T  17311845 atccatgcaaacctttttttatgtccactatttgagacctctagaaagcgaagattgttggtctttagttgccagacatgcatttagaacatgtaacaac 17311944  T
Q  164 caacaacgatccaatctagaggaaattggcagaggaattgcaaataaatgttatggatcaccatttgctgcagtagcacttg 245  Q
    || |||||||||||| |||| ||| | || ||   ||| ||||  ||||||||||||| |||||| ||||||||||||||||    
T  17311945 cagcaacgatccaatttagaagaagtaggtaggaaaatggcaataaaatgttatggattaccattagctgcagtagcacttg 17312026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 13933562 - 13933647
Alignment:
Q  156 gtaacgaccaacaacgatccaatctagaggaaattggcagaggaattgcaaataaatgttatggatcaccatttgctgcagtagca 241  Q
    ||||| |||||||||||||||||||| |  |||||||||||| |||||| || |||||| |||| |  ||||| |||||| |||||    
T  13933562 gtaactaccaacaacgatccaatctaaaaaaaattggcagagaaattgccaaaaaatgtgatggcttgccattagctgcaatagca 13933647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 14005142 - 14005101
Alignment:
Q  110 agtgaagattgctggactttacttgccggacatgcatttgga 151  Q
    ||||||||||||||| |||||||||||  |||||||||||||    
T  14005142 agtgaagattgctggtctttacttgccaaacatgcatttgga 14005101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 16446921 - 16447056
Alignment:
Q  79 tctttctgtccactacttgagacctctagaaagtgaagattgctggactttacttgccggacatgcatttggagattgtaacgaccaacaacgatccaat 178  Q
    ||||| ||| ||||| ||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||   |||||| ||||| || || |||||    
T  16446921 tctttatgttcactatttgagacctctcgaaagtgaagattgctggtctttaattgccagacatgcatttggaccatgtaactaccaagaaagaaccaat 16447020  T
Q  179 ctagaggaaattggcagaggaattgcaaataaatgt 214  Q
    ||||| ||||||||||| | ||||||||| ||||||    
T  16447021 ctagaagaaattggcagggaaattgcaaaaaaatgt 16447056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 5988620 - 5988783
Alignment:
Q  64 atccatgcaaacctttctttctgtccactacttgagacctctagaaagtgaagattgctggactttacttgccggacatgcatttggagattgtaacgac 163  Q
    ||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||| ||| ||||| ||||  |||||||||||||    || | ||||    
T  5988620 atccatgcaaatctttctctctgtccactatttgagacctctggaaagtgaagattgttggtctttagttgctagacatgcatttggcacatgcagcgac 5988719  T
Q  164 caacaacgatccaatctagaggaaattggcagaggaattgcaaataaatgttatggatcaccat 227  Q
      | ||| |||||||||||| |||||||||||   ||||||||| |||||| |||||| |||||    
T  5988720 ataaaacaatccaatctagaagaaattggcaggaaaattgcaaaaaaatgtgatggattaccat 5988783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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