View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13212_low_29 (Length: 261)

Name: NF13212_low_29
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13212_low_29
NF13212_low_29
[»] chr8 (3 HSPs)
chr8 (69-135)||(44561434-44561500)
chr8 (12-74)||(44572472-44572534)
chr8 (192-249)||(44561384-44561441)


Alignment Details
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 44561500 - 44561434
Alignment:
Q  69 actattatcattttaaaatccttcaattgctcctgaaacatacgtaaaactaattgtaatttcttct 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44561500 actattatcattttaaaatccttcaattgctcctgaaacatacgtaaaactaattgtaatttgttct 44561434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 44572534 - 44572472
Alignment:
Q  12 aattctttaatccttcctgtattatgatacttttgtatatggtatagtttaatatatactatt 74  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44572534 aattctttaatccttcctgtattatgatacttttatatatggtatagtttaatatatactatt 44572472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 44561441 - 44561384
Alignment:
Q  192 tttgttcttaatcttctttccaactgaattgaatgaactcgaccgatcccatgaccaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44561441 tttgttcttaatcttctttccaactgaattgaatgaactcgaccgatcccatgaccaa 44561384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University