View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13212_low_30 (Length: 259)
Name: NF13212_low_30
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 12153791 - 12154035
Alignment:
| Q |
1 |
caaggataagcattccaagaaagccaaggtccaagatcacacaaggatacatatgacgagggtgttggcttagtcatgtgcggaaaaccgcacaatagcg |
100 |
Q |
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| T |
12153791 |
caaggataagcattccaagaaagccaaggcccaagatcacacaaggatacatatgacgagggtgttggcttagacatgtgcggaaaaccgcacaatagcg |
12153890 |
T |
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| Q |
101 |
cgtctcaaaccaatctatctcgtccaactcatctctaatcgctctcgtggatcacgccgcatctcatggagacggttaaagccctccacgcatatataag |
200 |
Q |
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| T |
12153891 |
cgtctcaaaccaatctatctcgtccaactcatctctaatcgctctcgtggatcgcgccgcatctcatggagacggttaaatccctccaagcatatataag |
12153990 |
T |
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| Q |
201 |
gttgactcagcgtcactccc-aggtacactttaattcacccccat |
244 |
Q |
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| T |
12153991 |
gttgactcagcgtcactcccaaggtacactttaattcacccccat |
12154035 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 4522662 - 4522613
Alignment:
| Q |
129 |
tcatctctaatcgctctcgtggatcacgccgcatctcatggagacggtta |
178 |
Q |
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| T |
4522662 |
tcatctctaaccactcccttggatcacgccgcatatcatggagacggtta |
4522613 |
T |
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