View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13212_low_31 (Length: 255)
Name: NF13212_low_31
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 15294473 - 15294695
Alignment:
| Q |
1 |
aattcccataaaattctagactatactaaagttattgaagtaacaccaagatgtccacaagctggttctctaacagatgatcattcctcggcgactgatt |
100 |
Q |
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| T |
15294473 |
aattcacataaaattccagcctataagaaagtaattggagtaacaccaagatgtccacaagctggttctctaactgatgatcattcctcggcggctgatt |
15294572 |
T |
|
| Q |
101 |
aaagcacccctgtacatgttacaacagtacaaacagagaaacagacatagaagaggtgagtacatcataaataaattacatgttacatacaaatagatga |
200 |
Q |
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| T |
15294573 |
aaagcacccctgtacatgttacaacagtacaaacagagaaacagacatagaagaggttagtacatcataaataaattacatgttacgtacaaatagatga |
15294672 |
T |
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| Q |
201 |
aacacacccaatacaataccata |
223 |
Q |
| |
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|||| ||||||||||| |||||| |
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| T |
15294673 |
aacaaacccaatacaacaccata |
15294695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15301668 - 15301895
Alignment:
| Q |
1 |
aattcccataaaattctagactatactaaagttattgaagtaacaccaagatgtccacaagctggttctctaacagatgatcattcctcggcgactgatt |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15301668 |
aattcccataaaattccagactatactaaagttattgaagtaacaccaagatgtccacaagctggttctctaactgatgatcattcctcggcgactgatt |
15301767 |
T |
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| Q |
101 |
aaagcacccctgtacatgttacaacagtacaaacagagaaacagacatagaagaggtgagtacatcataaataaattacatgttacatacaaatagatga |
200 |
Q |
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| T |
15301768 |
aaagcacccctttacatgttacaacagtac--------aaacagacatataagaggtgagtgcatcataaataaattacatgttacgtacaaataaatga |
15301859 |
T |
|
| Q |
201 |
aacacacccaatacaataccatatagcaccactaac |
236 |
Q |
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|||| ||||| |||| ||||||||||||||||||| |
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| T |
15301860 |
aacaaacccagcacaacaccatatagcaccactaac |
15301895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 40693746 - 40693841
Alignment:
| Q |
39 |
agtaacaccaa-gatgtccacaagctggttctctaacagatgatcattcctcggcgactgattaaagcacccctgtacatgttacaacagtacaaaca |
135 |
Q |
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||||||||||| | ||||||||||||||||||| ||| ||| || |||| || ||||| || ||||| |||||||||||||||||| ||||||||| |
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| T |
40693746 |
agtaacaccaaagttgtccacaagctggttctcaaaccgatcat--ttccacgacgacttatgaaagctcccctgtacatgttacaagtgtacaaaca |
40693841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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