View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13212_low_40 (Length: 234)
Name: NF13212_low_40
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 35475571 - 35475663
Alignment:
| Q |
104 |
aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaataca-ttttttttaatacgataccaacttattatccctctc |
195 |
Q |
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| T |
35475571 |
aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaatacatttttttttaatacgataccaacttattatccctctc |
35475663 |
T |
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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 35474991 - 35475084
Alignment:
| Q |
21 |
catgcacatgttagatgaatttgtggtgtatgcaaaatg--nnnnnnnnnacaggttagattagattagattatataccactctcaagtcaataatctt |
117 |
Q |
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| T |
35474991 |
catgcacatgttagatgaatttgtggtgtatgcaaaatgtttttttttttacagg-----ttagattagattatataccactctcaagtcaataatctt |
35475084 |
T |
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