View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13212_low_7 (Length: 441)
Name: NF13212_low_7
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 422
Target Start/End: Complemental strand, 30170431 - 30170010
Alignment:
| Q |
10 |
agaagaacctatggctgttcaagaggagttttcacaggtatctaacaggtctattctatgaaccactaatttaatgtttgccgtgatattttcctgaatt |
109 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
30170431 |
agaagaacctgtggctgttcaagaggagttttcacaggtatctaacacgtctattctatgtacctctaatttaatgtttgccgtattattttcctgaatt |
30170332 |
T |
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| Q |
110 |
tggagtttaagttttgtgattttattcaaatttgaattgaatacactattaataaggtcaacatcattgaggtaactaagttttaaatacaaagttatat |
209 |
Q |
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| T |
30170331 |
tggagtttaagttgtgtgattttattcaactttgaattgaatatactatcgataaggtccacatcattgaggtaactaacctttaaatacaaagttatat |
30170232 |
T |
|
| Q |
210 |
ggttgattaattatcagcagaaaagtctttaatcaaatgcaatatgttatcaatg------ttgcagtcagatacgcctactacaccaacatcgacaagg |
303 |
Q |
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| T |
30170231 |
ggttgattagttatcagtggaaaagcctttaatcaaatgctatatgttatgaatgttaaaattgcagtcagatacgcctacaacaccaacattgacaggc |
30170132 |
T |
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| Q |
304 |
agaggcgggggaaataatacaagggaacgtgattctggtggcagggagtaggaaaacatggatgctcttgatatcattac---tcatcatcaaataccac |
400 |
Q |
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| T |
30170131 |
agaggcgggggcaataatacaaaggaacgtgattctggtggcagggataaggaaaacatggatgctcttgatatcattactcatcatcatcaagtaccac |
30170032 |
T |
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| Q |
401 |
atgaattaaaaccagtagcccc |
422 |
Q |
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| T |
30170031 |
atgaattaaaaccagtagcccc |
30170010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 30144366 - 30144203
Alignment:
| Q |
5 |
gagagagaagaacctatggctgttcaagaggagttttcacaggtatctaacaggtctattctatgaaccactaatttaatgtttgccgtgatattttcct |
104 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| |
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| T |
30144366 |
gagatagaagaacctgtggctgttcaagaggagttttcacaggtatctaacaggtctattctatgtacctctaatttaatgtttgccatgatattttcct |
30144267 |
T |
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| Q |
105 |
gaatttggagtttaagttttgtgattttattcaaatttgaattgaatacactattaataaggtc |
168 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30144266 |
gaatttagagtttaagttttgtgattttattcaaatttgaattgaataaactattaataaggtc |
30144203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 30172211 - 30172060
Alignment:
| Q |
10 |
agaagaacctatggctgttcaagaggagttttcacaggtatctaacaggtctattctatgaaccactaatttaatgtttgccgtgatattttcctgaatt |
109 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| |
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| T |
30172211 |
agaagaacctgtggctgttcaagaggatttttcacaggtatctaacaggtctattctatgtacctctaatttaatgtttgccgtaatattttcctgaatt |
30172112 |
T |
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| Q |
110 |
tggagtttaagttttgtgattttattcaaatttgaattgaatacactattaa |
161 |
Q |
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| T |
30172111 |
tggagtttaagttttgtgattttattcaaatttgaattgaataaacaattaa |
30172060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 30187750 - 30187601
Alignment:
| Q |
10 |
agaagaacctatggctgttcaagaggagttttcacaggtatctaacaggtctattctatgaaccactaatttaatgtttgccgtgatattttcctgaatt |
109 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| |||| ||||||||||||||| |
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| T |
30187750 |
agaagaacctgtggctgttcaagaggagttttcacaggtatctaacaggtctattctatgtacctctaatt--atgttttccgtaatattttcctgaatt |
30187653 |
T |
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| Q |
110 |
tggagtttaagttttgtgattttattcaaatttgaattgaatacactattaa |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
30187652 |
tggagtttaagttttgtgattttattcaaatttgaattgaataaacaattaa |
30187601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 30169354 - 30169190
Alignment:
| Q |
98 |
ttttcctgaatttggagtttaagttttgtgattttattcaaatttgaattgaatacactattaataaggtcaacatcattgaggtaactaagttttaaat |
197 |
Q |
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||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||| || |||||||||||| | |||||| |||||||| ||||||| |
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| T |
30169354 |
ttttcctgaattttgaggttaagttttgtgattttatccaactttgaattgaataaacaattaataaggtccatatcattagagtaactaaattttaaac |
30169255 |
T |
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| Q |
198 |
acaaagttatatgg--ttgattaattatcagcagaaaagtctttaatcaaatgcaatatgttatc |
260 |
Q |
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|| ||||||||||| ||||||||||||||| |||||| ||| | || |||| |||||||||| |
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| T |
30169254 |
accaagttatatggcattgattaattatcagttgaaaagccttaattcgaatgttatatgttatc |
30169190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 30171872 - 30171768
Alignment:
| Q |
157 |
attaataaggtcaacatcattgaggtaactaagttttaaatacaaagtt----atatggttgattaattatcagcagaaaagtctttaatcaaatgcaat |
252 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| || |
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| T |
30171872 |
attaataaggtccacatcattgaggtaactaaattttaaatacaaagttatatatatggttgattaattatcagtggaaaagcctttaatcaaatgctat |
30171773 |
T |
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| Q |
253 |
atgtt |
257 |
Q |
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||||| |
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| T |
30171772 |
atgtt |
30171768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 30187413 - 30187309
Alignment:
| Q |
157 |
attaataaggtcaacatcattgaggtaactaagttttaaatacaaagtt----atatggttgattaattatcagcagaaaagtctttaatcaaatgcaat |
252 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| || |
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| T |
30187413 |
attaataaggtccacatcattgaggtaactaaattttaaatacaaagttatatatatggttgattaattatcagtggaaaagcctttaatcaaatgctat |
30187314 |
T |
|
| Q |
253 |
atgtt |
257 |
Q |
| |
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||||| |
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|
| T |
30187313 |
atgtt |
30187309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 30144807 - 30144751
Alignment:
| Q |
369 |
tcttgatatcattactcat---catcaaataccacatgaattaaaaccagtagcccc |
422 |
Q |
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|||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
30144807 |
tcttcatatcattactcatgatcatcaagtaccacatgaattaaaaccagtagcccc |
30144751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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