View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13212_low_8 (Length: 417)

Name: NF13212_low_8
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13212_low_8
NF13212_low_8
[»] chr6 (15 HSPs)
chr6 (241-398)||(16256733-16256890)
chr6 (1-64)||(3483832-3483895)
chr6 (1-62)||(10187991-10188052)
chr6 (1-63)||(30986369-30986431)
chr6 (1-59)||(32853960-32854018)
chr6 (1-63)||(12141501-12141563)
chr6 (1-63)||(27534800-27534862)
chr6 (1-54)||(5863302-5863355)
chr6 (261-317)||(19815932-19815988)
chr6 (4-63)||(12309697-12309756)
chr6 (1-63)||(2367442-2367504)
chr6 (5-63)||(24225824-24225882)
chr6 (1-63)||(31496550-31496612)
chr6 (1-63)||(31501936-31501998)
chr6 (1-59)||(32053198-32053255)
[»] chr2 (14 HSPs)
chr2 (1-64)||(6027810-6027873)
chr2 (1-64)||(13830852-13830915)
chr2 (1-63)||(30847063-30847125)
chr2 (1-64)||(9632503-9632566)
chr2 (1-64)||(13705264-13705327)
chr2 (1-64)||(37106809-37106872)
chr2 (6-64)||(10920760-10920818)
chr2 (1-63)||(12341717-12341779)
chr2 (1-59)||(24414046-24414104)
chr2 (1-63)||(42797911-42797973)
chr2 (3-63)||(10208341-10208401)
chr2 (252-304)||(32061397-32061449)
chr2 (1-63)||(31942095-31942157)
chr2 (3-63)||(36128016-36128076)
[»] chr4 (20 HSPs)
chr4 (1-63)||(53906249-53906311)
chr4 (1-64)||(5902530-5902593)
chr4 (4-60)||(44887669-44887725)
chr4 (1-64)||(43893349-43893412)
chr4 (5-63)||(37349238-37349296)
chr4 (1-64)||(31752578-31752641)
chr4 (1-63)||(6382183-6382245)
chr4 (1-63)||(11028195-11028257)
chr4 (1-63)||(19882967-19883029)
chr4 (1-63)||(31918469-31918531)
chr4 (3-59)||(6481950-6482006)
chr4 (3-63)||(11122780-11122840)
chr4 (1-61)||(13768365-13768425)
chr4 (3-63)||(26564955-26565015)
chr4 (3-63)||(55826534-55826594)
chr4 (3-65)||(21423985-21424047)
chr4 (252-302)||(30299551-30299601)
chr4 (1-63)||(39047074-39047136)
chr4 (1-33)||(7985066-7985098)
chr4 (3-63)||(44317659-44317719)
[»] chr3 (18 HSPs)
chr3 (1-63)||(49580180-49580242)
chr3 (1-65)||(7469686-7469750)
chr3 (1-63)||(39655183-39655245)
chr3 (1-64)||(10371182-10371245)
chr3 (1-63)||(29284452-29284514)
chr3 (5-63)||(52572729-52572787)
chr3 (3-64)||(29858484-29858545)
chr3 (3-63)||(42758492-42758552)
chr3 (1-63)||(4557215-4557277)
chr3 (3-65)||(39728789-39728851)
chr3 (3-63)||(12369112-12369172)
chr3 (3-63)||(44106704-44106764)
chr3 (1-60)||(22535754-22535813)
chr3 (1-63)||(4015954-4016016)
chr3 (5-63)||(6738315-6738373)
chr3 (1-63)||(23546858-23546920)
chr3 (1-63)||(44953345-44953407)
chr3 (1-62)||(54317260-54317321)
[»] chr1 (15 HSPs)
chr1 (1-63)||(29936539-29936601)
chr1 (1-62)||(13390513-13390574)
chr1 (1-64)||(24710964-24711027)
chr1 (1-63)||(24236671-24236733)
chr1 (3-63)||(17135066-17135126)
chr1 (3-63)||(20774685-20774745)
chr1 (3-63)||(23968698-23968758)
chr1 (3-63)||(34673192-34673252)
chr1 (1-63)||(23490681-23490743)
chr1 (1-63)||(49250683-49250745)
chr1 (1-62)||(34059059-34059120)
chr1 (1-62)||(34611190-34611251)
chr1 (1-64)||(36187129-36187192)
chr1 (1-63)||(5181156-5181218)
chr1 (1-63)||(18353990-18354052)
[»] chr5 (16 HSPs)
chr5 (1-65)||(5908597-5908661)
chr5 (1-64)||(10127190-10127253)
chr5 (1-63)||(4920942-4921004)
chr5 (3-64)||(33727911-33727972)
chr5 (3-63)||(12447486-12447546)
chr5 (3-63)||(13401915-13401975)
chr5 (3-59)||(22694817-22694873)
chr5 (1-64)||(29245861-29245924)
chr5 (1-63)||(4583235-4583297)
chr5 (1-63)||(15890322-15890384)
chr5 (3-63)||(27088284-27088344)
chr5 (3-63)||(30996713-30996773)
chr5 (252-302)||(37501902-37501952)
chr5 (276-326)||(43226574-43226624)
chr5 (3-63)||(35311931-35311991)
chr5 (3-63)||(40517924-40517984)
[»] chr7 (21 HSPs)
chr7 (1-63)||(18825776-18825838)
chr7 (1-64)||(17885586-17885649)
chr7 (1-64)||(30650752-30650815)
chr7 (1-63)||(35074591-35074653)
chr7 (1-62)||(10072587-10072648)
chr7 (3-63)||(21702782-21702842)
chr7 (3-63)||(38153009-38153069)
chr7 (1-63)||(16866290-16866352)
chr7 (3-61)||(37195921-37195979)
chr7 (1-63)||(45885675-45885737)
chr7 (3-63)||(27850242-27850302)
chr7 (252-304)||(37571161-37571213)
chr7 (4-63)||(2630484-2630543)
chr7 (1-64)||(26004395-26004458)
chr7 (1-63)||(23533526-23533588)
chr7 (5-63)||(25905753-25905811)
chr7 (1-63)||(44734269-44734331)
chr7 (6-63)||(17851978-17852035)
chr7 (3-63)||(24425491-24425551)
chr7 (3-63)||(24753286-24753346)
chr7 (1-33)||(39317116-39317148)
[»] chr8 (13 HSPs)
chr8 (1-64)||(32303177-32303240)
chr8 (1-63)||(24928065-24928127)
chr8 (4-63)||(20399711-20399770)
chr8 (251-302)||(21261005-21261056)
chr8 (1-63)||(1063629-1063691)
chr8 (1-63)||(24869934-24869996)
chr8 (1-63)||(34777176-34777238)
chr8 (3-63)||(17469361-17469421)
chr8 (1-63)||(27932529-27932592)
chr8 (1-63)||(40248281-40248343)
chr8 (3-63)||(2075744-2075804)
chr8 (1-29)||(4230674-4230702)
chr8 (15-63)||(34139582-34139630)
[»] scaffold1298 (1 HSPs)
scaffold1298 (271-392)||(1444-1565)
[»] scaffold0795 (1 HSPs)
scaffold0795 (9-63)||(347-401)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-70)||(33515-33584)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 241 - 398
Target Start/End: Complemental strand, 16256890 - 16256733
Alignment:
Q  241 aacaaacacgttgcaattttcaatttattcatacaccaatgccaagatatcaccttgacttgttccaccatttcatcaaccccacaaactttgttcttaa 340  Q
    |||||||| ||||||||||||| | |||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  16256890 aacaaacaagttgcaattttcattctattcatataccaatgctaagagatcaccttgacttgatccaccatttcatcaaccccacaaactttgttattaa 16256791  T
Q  341 aaaacctatcatttcgcaattttcaaataatccaaatcaccgcatgccaaataaccca 398  Q
    ||| ||||||||||| ||  || ||||| |||||||  ||||| ||||| ||||||||    
T  16256790 aaaccctatcatttctcatcttccaaatgatccaaacaaccgcgtgccatataaccca 16256733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3483895 - 3483832
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    ||||||||||||||||||||||||||||| ||| |||| |||| |||||||||| |||||||||    
T  3483895 acccgtcaaattgggtttggttcgggcgggtaaccatgagtatgggttttgttgccatgcctac 3483832  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10188052 - 10187991
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcct 62  Q
    ||||||||||||||||||||||||||||| ||| || |||||| |||||||||| |||||||    
T  10188052 acccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcct 10187991  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30986369 - 30986431
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||| ||||||||||||||| ||| || |||||| |||||||||| ||||||||    
T  30986369 acccgtcaaattgagtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 30986431  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32853960 - 32854018
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatg 59  Q
    ||||||||||||||||||||||||| ||||||| || |||||| |||||||||| ||||    
T  32853960 acccgtcaaattgggtttggttcggtcggataaccacgggtatgggttttgttgccatg 32854018  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12141501 - 12141563
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||  |||||||||||||| ||| ||| ||||| |||||||||| ||||||||    
T  12141501 acccgtcaaattgaatttggttcgggcgggtaaccataggtatgggttttgttgccatgccta 12141563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27534800 - 27534862
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||| ||||||||||| ||| ||| || |||||| |||||||||| ||||||||    
T  27534800 acccgtcaaattgagtttggttcggacggttaaccacgggtatgggttttgttgccatgccta 27534862  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5863355 - 5863302
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttg 54  Q
    ||||||||||||||||||||||||||| | ||| || |||||| ||||||||||    
T  5863355 acccgtcaaattgggtttggttcgggcaggtaaccacgggtatgggttttgttg 5863302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 19815932 - 19815988
Alignment:
Q  261 caatttattcatacaccaatgccaagatatcaccttgacttgttccaccatttcatc 317  Q
    |||| ||||||||| ||||||||| || | |||||||| ||||||||||||||||||    
T  19815932 caatctattcatactccaatgccacgagaccaccttgatttgttccaccatttcatc 19815988  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 12309697 - 12309756
Alignment:
Q  4 cgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||| |||||||||||| ||| |  |||||| || ||||||||||||||||    
T  12309697 cgtcaaattgggtctggttcgggcgggtaaccgcgggtatggggtttgttgtcatgccta 12309756  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2367442 - 2367504
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||| |||||||||||||||||||| ||| ||| || || ||| |||||||||| ||||||||    
T  2367442 acccatcaaattgggtttggttcggacgggtaaccacggatatgggttttgttgccatgccta 2367504  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 24225824 - 24225882
Alignment:
Q  5 gtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||  |||||||||| ||| ||| |||||||||  ||||||||||||||||||    
T  24225824 gtcaaattgaatttggttcggacgggtaaccatgggtatgagttttgttgtcatgccta 24225882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31496550 - 31496612
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||| |||||||| || ||| ||| || |||||| |||||||||| ||||||||    
T  31496550 acccgtcaaattgagtttggtttggacgggtaaccacgggtatgggttttgttgccatgccta 31496612  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31501936 - 31501998
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||| |||||||| || ||| ||| || |||||| |||||||||| ||||||||    
T  31501936 acccgtcaaattgagtttggtttggacgggtaaccacgggtatgggttttgttgccatgccta 31501998  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32053198 - 32053255
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatg 59  Q
    |||||||||||||||||||| || ||||||||| | ||||||| |||||||||| ||||    
T  32053198 acccgtcaaattgggtttgg-tccggcggataaacgtgggtatgggttttgttgccatg 32053255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6027873 - 6027810
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    ||||||||||||||||||||||||||||||||| || | |||| ||||||||||||||||||||    
T  6027873 acccgtcaaattgggtttggttcgggcggataaccacgagtatgggttttgttgtcatgcctac 6027810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 13830852 - 13830915
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    ||||||||||||||||||||||||||||| ||| || |||||| |||||||||||||| |||||    
T  13830852 acccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgtcatacctac 13830915  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30847063 - 30847125
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||||| ||| || |||||| |||||||||| ||||||||    
T  30847063 acccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 30847125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 9632503 - 9632566
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    ||||||||||||| ||||||||||||||| ||| || |||||| |||||||||| |||||||||    
T  9632503 acccgtcaaattgagtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctac 9632566  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 13705327 - 13705264
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    |||||||||||||||| |||||||| ||| ||| |||||||||  ||||||||| |||||||||    
T  13705327 acccgtcaaattgggtatggttcggacgggtaaccatgggtatgagttttgttgccatgcctac 13705264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 37106809 - 37106872
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    ||||||||||||||||||||||||||||| ||| |  | ||||  |||||||||||||||||||    
T  37106809 acccgtcaaattgggtttggttcgggcgggtaaccgcgagtatgagttttgttgtcatgcctac 37106872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 10920760 - 10920818
Alignment:
Q  6 tcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    ||||||||| |||||||||||||| ||| || |||||| |||||||||| |||||||||    
T  10920760 tcaaattggatttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctac 10920818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12341717 - 12341779
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||| ||||||| |  ||||||  ||||||||| ||||||||    
T  12341717 acccgtcaaattgggtttggttcggacggataaccgcgggtatgagttttgttgccatgccta 12341779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 24414104 - 24414046
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatg 59  Q
    ||||||||||||||||||||||||||||| ||| ||  ||||| |||||||||| ||||    
T  24414104 acccgtcaaattgggtttggttcgggcgggtaaccacaggtatgggttttgttgccatg 24414046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42797973 - 42797911
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||| | |||||||||||||| ||| || |||||| |||||||||| ||||||||    
T  42797973 acccgtcaaattagatttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 42797911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 10208401 - 10208341
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||   ||||||||||||||||||||| ||||||  ||||||||| ||||||||    
T  10208401 ccgtcaaattaactttggttcgggcggataatcacgggtatgagttttgttgccatgccta 10208341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 32061449 - 32061397
Alignment:
Q  252 tgcaattttcaatttattcatacaccaatgccaagatatcaccttgacttgtt 304  Q
    |||||| |||||  || |||||||||||||||||||||| |||||||||||||    
T  32061449 tgcaatcttcaacctactcatacaccaatgccaagatataaccttgacttgtt 32061397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31942157 - 31942095
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||| |||||||| |||||||| |||||| ||| || |||||| |||||||||||||| ||||    
T  31942157 acccatcaaattgagtttggtttgggcgggtaaccacgggtatgggttttgttgtcataccta 31942095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 36128076 - 36128016
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||| |||||||||||| ||  ||| || |||||| |||||||||| ||||||||    
T  36128076 ccgtcaaattaggtttggttcggacgagtaaccacgggtatgggttttgttgccatgccta 36128016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 53906311 - 53906249
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||    
T  53906311 acccgtcaaattgggtttggttcgggcggataaccgtgggtatgggttttgttgccatgccta 53906249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5902593 - 5902530
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    ||||||||||||| ||||||||||||||| ||| || ||||||||||||||||| |||||||||    
T  5902593 acccgtcaaattgagtttggttcgggcgggtaaccacgggtataggttttgttgccatgcctac 5902530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 44887669 - 44887725
Alignment:
Q  4 cgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgc 60  Q
    |||||||||||||||||||||||||||||| | |||||||  |||||||||||||||    
T  44887669 cgtcaaattgggtttggttcgggcggataaccgtgggtatgagttttgttgtcatgc 44887725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 43893349 - 43893412
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    |||||||||||||||||||| |||||||| ||| || |||||| |||||||||| |||||||||    
T  43893349 acccgtcaaattgggtttggctcgggcgggtaaccacgggtatgggttttgttgccatgcctac 43893412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 37349238 - 37349296
Alignment:
Q  5 gtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||| ||| || |||||| |||||||||| ||||||||    
T  37349238 gtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 37349296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31752578 - 31752641
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    |||||||||||||| |||| ||||||||| ||| |  |||||| ||||||||||||||||||||    
T  31752578 acccgtcaaattggatttgattcgggcgggtaaccgcgggtatgggttttgttgtcatgcctac 31752641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6382245 - 6382183
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||| ||||||||| ||| || |||||| |||||| ||| ||||||||    
T  6382245 acccgtcaaattgggtttgattcgggcgggtaaccacgggtatgggttttattgccatgccta 6382183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11028195 - 11028257
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||||||||||||||| || ||| || | |||| |||||||||| ||||||||    
T  11028195 acccgtcaaattgggtttggttcgggtgggtaaccacgtgtatgggttttgttgccatgccta 11028257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 19883029 - 19882967
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||||| || ||  | |||| |||||||||| ||||||||    
T  19883029 acccgtcaaattgggtttggttcgggcgggtattcgcgagtatgggttttgttgccatgccta 19882967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31918531 - 31918469
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||| | ||| || || ||| |||||||||| ||||||||    
T  31918531 acccgtcaaattgggtttggttcgggcaggtaaccacggatatgggttttgttgccatgccta 31918469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 6482006 - 6481950
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatg 59  Q
    ||||||||||| ||||| |||||| |||||| || ||||||||||||||||| ||||    
T  6482006 ccgtcaaattgagtttgattcgggtggataaccacgggtataggttttgttgccatg 6481950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 11122840 - 11122780
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||| ||||||||||||||| ||| || ||||||  ||||||||| ||||||||    
T  11122840 ccgtcaaattgagtttggttcgggcgggtaaccacgggtatgagttttgttgccatgccta 11122780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 13768425 - 13768365
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcc 61  Q
    ||||||||||||| ||||| |||||| || ||| ||||||||| |||||||||| ||||||    
T  13768425 acccgtcaaattgagtttgattcgggtgggtaaccatgggtatcggttttgttgccatgcc 13768365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 26564955 - 26565015
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||| ||||||||||| || ||| || |||||| |||||||||| ||||||||    
T  26564955 ccgtcaaattggatttggttcgggtgggtaaccacgggtatgggttttgttgccatgccta 26565015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 55826594 - 55826534
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||| |||||||||| ||| ||| || |||||| |||||||||| ||||||||    
T  55826594 ccgtcaaattggatttggttcggacgggtaaccacgggtatgggttttgttgccatgccta 55826534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 21423985 - 21424047
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctacc 65  Q
    |||||||||||| |||||||||||||| ||| || ||||||  ||||| ||| ||||||||||    
T  21423985 ccgtcaaattggatttggttcgggcgggtaaccacgggtatgagttttattgccatgcctacc 21424047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 30299551 - 30299601
Alignment:
Q  252 tgcaattttcaatttattcatacaccaatgccaagatatcaccttgacttg 302  Q
    |||||| |||||  || |||||||||||||||||||||| |||||||||||    
T  30299551 tgcaatcttcaacctactcatacaccaatgccaagatataaccttgacttg 30299601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39047074 - 39047136
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||| |||||||||||||| ||||| ||| ||| | ||| |||||||||||||| ||||||||    
T  39047074 acccatcaaattgggtttgattcggacgggtaaccgtggatataggttttgttgccatgccta 39047136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7985098 - 7985066
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  7985098 acccgtcaaattgggtttggttcaggcggataa 7985066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 44317659 - 44317719
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||| ||||||||  ||| || |||||| |||||||||| | ||||||    
T  44317659 ccgtcaaattgggtttgattcgggcgagtaaccacgggtatgggttttgttgccttgccta 44317719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 49580180 - 49580242
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||| |||||||||||||||||| || |||||| |||||||||||||||||||    
T  49580180 acccgtcaaattggatttggttcgggcggataaccacgggtatgggttttgttgtcatgccta 49580242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7469750 - 7469686
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctacc 65  Q
    ||||||||||||||||||||||||||||| ||| || |||||| |||||||||| ||||||||||    
T  7469750 acccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctacc 7469686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 39655245 - 39655183
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||||| ||| || |||||| |||||||||| ||||||||    
T  39655245 acccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 39655183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10371245 - 10371182
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    |||||||||||||||||||||||| |||| ||| || |||| | ||||||||||||||||||||    
T  10371245 acccgtcaaattgggtttggttcgagcgggtaaccacgggtctgggttttgttgtcatgcctac 10371182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29284452 - 29284514
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||||| ||| || ||||||  ||||||||| ||||||||    
T  29284452 acccgtcaaattgggtttggttcgggcgggtaaccacgggtatgagttttgttgccatgccta 29284514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 52572729 - 52572787
Alignment:
Q  5 gtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||| ||||||||||||||||||| || |||||| |||||||||| ||||||||    
T  52572729 gtcaaattgagtttggttcgggcggataaccacgggtatgggttttgttgccatgccta 52572787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 29858545 - 29858484
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    |||| |||||||||||||||||||||| ||| || |||||| |||||||||| |||||||||    
T  29858545 ccgttaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctac 29858484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 42758492 - 42758552
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||||||| |||||||| ||| || |||||| |||||||||| ||||||||    
T  42758492 ccgtcaaattgggtttggatcgggcgggtaaccacgggtatgggttttgttgccatgccta 42758552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4557277 - 4557215
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||||||| ||||||| || ||| || ||||||  ||||||||||||||||||    
T  4557277 acccgtcaaattgggttttgttcgggtgggtaaccacgggtatgagttttgttgtcatgccta 4557215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 39728789 - 39728851
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctacc 65  Q
    |||||||||||| |||||||||| ||| ||| || |||||| |||||||||| ||||||||||    
T  39728789 ccgtcaaattggatttggttcggacgggtaaccacgggtatgggttttgttgccatgcctacc 39728851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 12369112 - 12369172
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||| |||||||||||| | |||| || |||||| |||||||||| ||||||||    
T  12369112 ccgtcaaattgagtttggttcgggtgaataaccacgggtatgggttttgttgccatgccta 12369172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 44106764 - 44106704
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||| |||| |||||||||| |||||| ||||||  ||||||||| ||||||||    
T  44106764 ccgtcaaattgagttttgttcgggcgggtaatcacgggtatgtgttttgttgccatgccta 44106704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 22535813 - 22535754
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgc 60  Q
    |||| |||||||| ||||||||||||||||||| |  |||||| |||||||||| |||||    
T  22535813 acccatcaaattgagtttggttcgggcggataaccgcgggtatgggttttgttgccatgc 22535754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4016016 - 4015954
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||| |||| ||||||| || ||| || |||||| |||||||||| ||||||||    
T  4016016 acccgtcaaattgagtttcgttcgggtgggtaaccacgggtatgggttttgttgccatgccta 4015954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 6738373 - 6738315
Alignment:
Q  5 gtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||| ||| |  |||||| |||||| ||| ||||||||    
T  6738373 gtcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttattgccatgccta 6738315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23546920 - 23546858
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||| ||||||||||||||||  |||| ||| || |||||| |||||||||| ||||||||    
T  23546920 acccgttaaattgggtttggttcatgcgggtaaccacgggtatgggttttgttgccatgccta 23546858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44953407 - 44953345
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||||||||||||| |||| ||| || ||||||   |||||||| ||||||||    
T  44953407 acccgtcaaattgggtttggttcgagcgggtaaccacgggtatgaattttgttgccatgccta 44953345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54317260 - 54317321
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcct 62  Q
    |||||||||||||| |||||||||||||| ||| || || ||| | |||||||| |||||||    
T  54317260 acccgtcaaattggatttggttcgggcgggtaaccacggatatggattttgttgccatgcct 54317321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 29936539 - 29936601
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||||| ||| || |||||| |||||||||||||||||||    
T  29936539 acccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgtcatgccta 29936601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13390513 - 13390574
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcct 62  Q
    ||||||||||||||||||||||||||||| ||| | ||||||| |||||||||| |||||||    
T  13390513 acccgtcaaattgggtttggttcgggcgggtaaccgtgggtatgggttttgttgccatgcct 13390574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 24710964 - 24711027
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    |||||||||||||  ||||||||||| ||||||||| |||| | ||||||||||||||||||||    
T  24710964 acccgtcaaattgaatttggttcgggtggataatcacgggtgtgggttttgttgtcatgcctac 24711027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24236733 - 24236671
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||| ||||||||||||||| ||| |||||||||  ||||||||| ||||||||    
T  24236733 acccgtcaaattgagtttggttcgggcgggtaaccatgggtatgagttttgttgccatgccta 24236671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 17135066 - 17135126
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||| ||| |  |||||| |||||||||| ||||||||    
T  17135066 ccgtcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgccta 17135126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 20774685 - 20774745
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||| ||| || | |||| |||||||||| ||||||||    
T  20774685 ccgtcaaattgggtttggttcgggcgggtaaccacgagtatgggttttgttgccatgccta 20774745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 23968698 - 23968758
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||| ||| |  |||||| |||||||||| ||||||||    
T  23968698 ccgtcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgccta 23968758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 34673252 - 34673192
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||| |||||||||||||||||||||| ||||||  |||||  ||||||||||||||||||    
T  34673252 ccgttaaattgggtttggttcgggcgggtaatcactggtatgagttttgttgtcatgccta 34673192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23490743 - 23490681
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||| |||||||||||||| |||  ||| |||| |||||||||| ||||||||    
T  23490743 acccgtcaaattggatttggttcgggcgggtaactatgagtatgggttttgttgccatgccta 23490681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 49250745 - 49250683
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||  |||||||||||||||||| || ||||||   |||||||||||||||||    
T  49250745 acccgtcaaattgaatttggttcgggcggataaccacgggtatgaattttgttgtcatgccta 49250683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 34059120 - 34059059
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcct 62  Q
    |||||||||||||  |||||||||| ||||||| | ||||||| |||||||||| |||||||    
T  34059120 acccgtcaaattgaatttggttcggacggataaccgtgggtatgggttttgttgccatgcct 34059059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34611190 - 34611251
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcct 62  Q
    |||||||||||||| |||||||| ||||| ||| || |||||| | ||||||||||||||||    
T  34611190 acccgtcaaattggatttggttcaggcgggtaaccacgggtatggattttgttgtcatgcct 34611251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36187192 - 36187129
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    ||||| ||||||| ||||||||||||||| |||  | |||||| |||||||||| |||||||||    
T  36187192 acccgccaaattgagtttggttcgggcgggtaacgacgggtatgggttttgttgccatgcctac 36187129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5181156 - 5181218
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||  |||||||||||||| ||| |  |||||| |||||||||| ||||||||    
T  5181156 acccgtcaaattgaatttggttcgggcgggtaaccgcgggtatgggttttgttgccatgccta 5181218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18354052 - 18353990
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||  |||||||||||||| |||||  |||||  |||||||||| ||||||||    
T  18354052 acccgtcaaattgaatttggttcgggcgggtaatcgcgggtacgggttttgttgccatgccta 18353990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5908661 - 5908597
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctacc 65  Q
    ||||||||||||||||||||||||||||||||| || |||||| | |||||||| ||||||||||    
T  5908661 acccgtcaaattgggtttggttcgggcggataaccacgggtatggattttgttgccatgcctacc 5908597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10127190 - 10127253
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    |||||||||||||| |||||||||||||||||| || |||||| | ||||||||||||||||||    
T  10127190 acccgtcaaattggatttggttcgggcggataaccacgggtatggattttgttgtcatgcctac 10127253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4920942 - 4921004
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||||| ||| || |||||| |||||||||| ||||||||    
T  4920942 acccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 4921004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 33727972 - 33727911
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    ||||||||||||||||||||||||||| ||| || |||||| |||||||||| |||||||||    
T  33727972 ccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgcctac 33727911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 12447486 - 12447546
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||||||||||||| || ||| || |||||| |||||||||| ||||||||    
T  12447486 ccgtcaaattgggtttggttcgggtgggtaaccacgggtatgggttttgttgccatgccta 12447546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 13401975 - 13401915
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||| ||| |  |||||| |||||||||| ||||||||    
T  13401975 ccgtcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgccta 13401915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 22694873 - 22694817
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatg 59  Q
    ||||||||||||||||||||||||||| ||| || |||||| |||||||||| ||||    
T  22694873 ccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatg 22694817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29245924 - 29245861
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    ||||||||||||| ||||||||||||||| ||| |  |||||| ||||||||||||||| ||||    
T  29245924 acccgtcaaattgagtttggttcgggcgggtaaccgcgggtatgggttttgttgtcatgtctac 29245861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4583235 - 4583297
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||||| ||| | ||| |||  ||||||||| ||||||||    
T  4583235 acccgtcaaattgggtttggttcgggcgggtaaccgtggatatgagttttgttgccatgccta 4583297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15890322 - 15890384
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||| |||||||||||||| ||| |  | |||| |||||||||||||||||||    
T  15890322 acccgtcaaattggatttggttcgggcgggtaaccgcgagtatgggttttgttgtcatgccta 15890384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 27088344 - 27088284
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||| || |||||||||||| ||||||||| |||||| | |||||||| ||||||||    
T  27088344 ccgtcaaaatgagtttggttcgggtggataatcacgggtatggattttgttgccatgccta 27088284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 30996713 - 30996773
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||| ||||||| | | | ||| |||||||||| ||||||||    
T  30996713 ccgtcaaattgggtttggttcggacggataaccgtagatatgggttttgttgccatgccta 30996773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 37501902 - 37501952
Alignment:
Q  252 tgcaattttcaatttattcatacaccaatgccaagatatcaccttgacttg 302  Q
    |||||| |||||  || |||||||||||||||||||||| |||||||||||    
T  37501902 tgcaatcttcaacctactcatacaccaatgccaagatataaccttgacttg 37501952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 326
Target Start/End: Original strand, 43226574 - 43226624
Alignment:
Q  276 ccaatgccaagatatcaccttgacttgttccaccatttcatcaaccccaca 326  Q
    |||||||||  | |||||||||||||| ||||||||||||||||| |||||    
T  43226574 ccaatgccacaaaatcaccttgacttgctccaccatttcatcaactccaca 43226624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 35311931 - 35311991
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||| ||| |  || |||  ||||| ||||||||||||    
T  35311931 ccgtcaaattgggtttggttcgggcgggtaaccgcggatatgagttttattgtcatgccta 35311991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 40517924 - 40517984
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||  |||||||| ||||| ||| || |||||| |||||||||| ||||||||    
T  40517924 ccgtcaaattgaatttggttcaggcgggtaaccacgggtatgggttttgttgccatgccta 40517984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18825838 - 18825776
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||| ||||||||    
T  18825838 acccgtcaaattgggtttggttcggacggttaaccatgggtatgggttttgttgccatgccta 18825776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17885586 - 17885649
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    ||||||||||||||||||||||||||| | ||| || |||||| |||||||||| |||||||||    
T  17885586 acccgtcaaattgggtttggttcgggcaggtaaccacgggtatgggttttgttgccatgcctac 17885649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 30650752 - 30650815
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    ||||||||||||||||||||||||||||| ||| || ||||||  ||||||||| |||||||||    
T  30650752 acccgtcaaattgggtttggttcgggcgggtaaccacgggtatgagttttgttgacatgcctac 30650815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35074591 - 35074653
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||| ||||||||||||||||||||| ||| || |||||| |||||||||| ||||||||    
T  35074591 acccgtctaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgccatgccta 35074653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 10072587 - 10072648
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcct 62  Q
    ||||||||||||||||||||||||||||| ||| |  |||||| |||||||||| |||||||    
T  10072587 acccgtcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgcct 10072648  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 21702782 - 21702842
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||| ||| || || ||| |||||||||| ||||||||    
T  21702782 ccgtcaaattgggtttggttcgggcgggtaaccacggatatgggttttgttgccatgccta 21702842  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 38153009 - 38153069
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||| ||||||||||||||| ||| | ||||||||| |||||||| ||||||||    
T  38153009 ccgtcaaattgagtttggttcgggcgggtaaccgtgggtatagtttttgttgccatgccta 38153069  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 16866290 - 16866352
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||||| ||| || || |||  ||||||||| ||||||||    
T  16866290 acccgtcaaattgggtttggttcgggcgggtaaccacggatatgagttttgttgccatgccta 16866352  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 37195979 - 37195921
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcc 61  Q
    ||||||||||| |||||||| |||||||||| || |||||| | |||||||||||||||    
T  37195979 ccgtcaaattgagtttggtttgggcggataaccacgggtatggattttgttgtcatgcc 37195921  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 45885737 - 45885675
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||| ||||||||||||||||| |||| ||| || |||||| |||||||||| ||||||||    
T  45885737 acccgttaaattgggtttggttcgagcgggtaaccacgggtatgggttttgttgccatgccta 45885675  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 27850302 - 27850242
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||| ||| || || |||  ||||||||| ||||||||    
T  27850302 ccgtcaaattgggtttggttcgggcgggtaaccacggatatgagttttgttgccatgccta 27850242  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 37571213 - 37571161
Alignment:
Q  252 tgcaattttcaatttattcatacaccaatgccaagatatcaccttgacttgtt 304  Q
    |||||| |||||  || |||||||||||||||||||||| |||||||||||||    
T  37571213 tgcaatcttcaacctactcatacaccaatgccaagatataaccttgacttgtt 37571161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 2630543 - 2630484
Alignment:
Q  4 cgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||| |||  | ||  ||||||||| |||||||||||||||||||    
T  2630543 cgtcaaattgggtttggtttgggtaggtatccatgggtatcggttttgttgtcatgccta 2630484  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 26004458 - 26004395
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    |||| |||||||| ||||||||||||||| ||| || ||||||  ||||||||| |||||||||    
T  26004458 acccatcaaattgtgtttggttcgggcgggtaaccacgggtatgagttttgttgccatgcctac 26004395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23533588 - 23533526
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||||||||||||||| || ||  |  |||||| | |||||||||||||||||    
T  23533588 acccgtcaaattgggtttggttcgggagggtacccgcgggtatggattttgttgtcatgccta 23533526  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 25905753 - 25905811
Alignment:
Q  5 gtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||| ||||| |||| ||| || |||||| |||||||||| ||||||||    
T  25905753 gtcaaattgggtttagttcgagcgggtaaccacgggtatgggttttgttgccatgccta 25905811  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44734331 - 44734269
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||||| ||| |  | ||||  ||||||||| ||||||||    
T  44734331 acccgtcaaattgggtttggttcgggcgggtaaccgcgagtatgagttttgttgccatgccta 44734269  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 17851978 - 17852035
Alignment:
Q  6 tcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||||||||||||| ||| ||   |||| |||||||||| ||||||||    
T  17851978 tcaaattgggtttggttcgggcgggtaaccacaagtatgggttttgttgccatgccta 17852035  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 24425491 - 24425551
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||| | ||| || | ||||  ||||||||| ||||||||    
T  24425491 ccgtcaaattgggtttggttcgggctggtaaccacgtgtatgagttttgttgccatgccta 24425551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 24753286 - 24753346
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||  |||||||||| ||| ||| || |||||| |||||||||| ||||||||    
T  24753286 ccgtcaaattgaatttggttcggacgggtaaccacgggtatgggttttgttgccatgccta 24753346  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39317116 - 39317148
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataa 33  Q
    ||||||||||||| |||||||||||||||||||    
T  39317116 acccgtcaaattgagtttggttcgggcggataa 39317148  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32303177 - 32303240
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctac 64  Q
    ||||||||||||||||||| ||||||||| ||| || |||||| |||||||||| |||||||||    
T  32303177 acccgtcaaattgggtttgtttcgggcgggtaaccacgggtatgggttttgttgccatgcctac 32303240  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 24928065 - 24928127
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||||| ||| |  |||||| |||||||||| ||||||||    
T  24928065 acccgtcaaattgggtttggttcgggcgggtaaccgcgggtatgggttttgttgccatgccta 24928127  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 20399711 - 20399770
Alignment:
Q  4 cgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||| |||| ||| || |||||| |||||||||| ||||||||    
T  20399711 cgtcaaattgggtttggttcgagcgggtaaccacgggtattggttttgttgccatgccta 20399770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 21261005 - 21261056
Alignment:
Q  251 ttgcaattttcaatttattcatacaccaatgccaagatatcaccttgacttg 302  Q
    |||||||||||||  || |||||||||||||||||||||| |||||||||||    
T  21261005 ttgcaattttcaacctactcatacaccaatgccaagatataaccttgacttg 21261056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 1063629 - 1063691
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||| ||||||||||||||||| ||| || ||||||  ||||||||| ||||||||    
T  1063629 acccgtcaaatcgggtttggttcgggcgggtaaccacgggtatgagttttgttgccatgccta 1063691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24869996 - 24869934
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||| |||| |||| |||||||| | ||||| | |||||||||||||||||||    
T  24869996 acccgtcaaattggatttgattcgagcggataaccgtgggtgtgggttttgttgtcatgccta 24869934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 34777176 - 34777238
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||| |||||||||||||||||| ||| |||||| ||||||  ||||||||| ||||||||    
T  34777176 acccgttaaattgggtttggttcggacgggtaatcacgggtatgagttttgttgccatgccta 34777238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 17469361 - 17469421
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    |||||||||||||||||||||||| || |||  | |||||| |||||||||| ||||||||    
T  17469361 ccgtcaaattgggtttggttcgggtgggtaactacgggtatgggttttgttgccatgccta 17469421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27932529 - 27932592
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataa-tcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||||||||| |||  |  ||||||  ||||||||||||||||||    
T  27932529 acccgtcaaattgggtttggttcgggcgggtaacccgcgggtatgagttttgttgtcatgccta 27932592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40248343 - 40248281
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||||| ||||  ||| |  |||||| |||||||||||||| ||||    
T  40248343 acccgtcaaattgggtttggttcaggcgagtaaccgcgggtatgggttttgttgtcataccta 40248281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 2075804 - 2075744
Alignment:
Q  3 ccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||||| ||||| ||| || || |||  ||||||||| ||||||||    
T  2075804 ccgtcaaattgggtttggttcaggcgggtaaccacggatatgagttttgttgccatgccta 2075744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 4230702 - 4230674
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcgg 29  Q
    |||||||||||||||||||||||||||||    
T  4230702 acccgtcaaattgggtttggttcgggcgg 4230674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 34139582 - 34139630
Alignment:
Q  15 gtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||||||||||||||||| || ||||||  ||||||||||| ||||||    
T  34139582 gtttggttcgggcggataaccacgggtatgagttttgttgtcgtgccta 34139630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1298 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1298
Description:

Target: scaffold1298; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 392
Target Start/End: Complemental strand, 1565 - 1444
Alignment:
Q  271 atacaccaatgccaagatatcaccttgacttgttccaccatttcatcaaccccacaaactttgttcttaaaaaacctatcatttcgcaattttcaaataa 370  Q
    |||||||||| | | |||| ||| |||||||| |||||||||||||| || || |||| ||| || || || ||||||||||| | ||  ||  ||||||    
T  1565 atacaccaatacaaggataacactttgacttgatccaccatttcatccactccccaaattttattgttgaagaacctatcattcctcatcttctaaataa 1466  T
Q  371 tccaaatcaccgcatgccaaat 392  Q
    ||||||| ||||||||||||||    
T  1465 tccaaataaccgcatgccaaat 1444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 347 - 401
Alignment:
Q  9 aattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgccta 63  Q
    ||||| ||||||||| ||||| |||||| || ||| |||||||||||||||||||    
T  347 aattgagtttggttctggcgggtaatcacggatatgggttttgttgtcatgccta 401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 33515 - 33584
Alignment:
Q  1 acccgtcaaattgggtttggttcgggcggataatcatgggtataggttttgttgtcatgcctaccacaca 70  Q
    ||||||||||||| |||| |||| || || ||| || || |||||||||||||| ||||||||| |||||    
T  33515 acccgtcaaattgagtttagttcaggtgggtaaccacggatataggttttgttgccatgcctactacaca 33584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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