View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13212_low_9 (Length: 390)
Name: NF13212_low_9
Description: NF13212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13212_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 63 - 345
Target Start/End: Complemental strand, 31125648 - 31125366
Alignment:
| Q |
63 |
cacctagtaaggaaaacactgaaacgcacacaaaaatggccctctcatcatcaatcaccagcgtccacataacagccctcgacgcaatcacaaacgtaaa |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31125648 |
cacctagtaaggaaaacactgaaacgcacacaaaaatggccctctcatcatcaatcaccagcgtccacataacagccctcgacgcaatcacaaacgtaaa |
31125549 |
T |
|
| Q |
163 |
ctccctcttcaccctcggcgtattcatcggcctctccttcaacccaaacgacccttccaacactctcaacacagacccctcctgtgtccccaccaccgcc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
31125548 |
ctccctcttcaccctcggcgtattcatcggcctctccttcaacccaaacgacccctccaacactctcaacaccaacccctcctgcatccccaccaccgcc |
31125449 |
T |
|
| Q |
263 |
atcgccgaaaacctcgtcgcatttcatgtctactcattcagctcattcctcttctctagtctcatcgctcttgctctcaaaca |
345 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
31125448 |
atcgccgaaaatctcgtcgcatttcatgtctactcattcagctcatttctcttctctagtctcatcgctcttgcactgaaaca |
31125366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 147 - 281
Target Start/End: Complemental strand, 2420410 - 2420276
Alignment:
| Q |
147 |
caatcacaaacgtaaactccctcttcaccctcggcgtattcatcggcctctccttcaacccaaacgacccttccaacactctcaacacagacccctcctg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| | |||||||||||||||| |||| ||||| |
|
|
| T |
2420410 |
caatcacaaacgtaaactccctcttcactctcggcatattcatcggcctctccttcaacccaaatgaccccttcaacactctcaacacaaacccgtcctg |
2420311 |
T |
|
| Q |
247 |
tgtccccaccaccgccatcgccgaaaacctcgtcg |
281 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| |
|
|
| T |
2420310 |
cgtccccaccaccgacatcgtcgaaaacctcgtcg |
2420276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 148 - 281
Target Start/End: Complemental strand, 10615566 - 10615433
Alignment:
| Q |
148 |
aatcacaaacgtaaactccctcttcaccctcggcgtattcatcggcctctccttcaacccaaacgacccttccaacactctcaacacagacccctcctgt |
247 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||||||||| ||| |||||||||||||||||||| | |||||||||||||||| |||| || || |
|
|
| T |
10615566 |
aatcacaaacgtaaactccctcttcactctcagcatattcatcgacctttccttcaacccaaacgaccccttcaacactctcaacacaaacccgtcttgc |
10615467 |
T |
|
| Q |
248 |
gtccccaccaccgccatcgccgaaaacctcgtcg |
281 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| |
|
|
| T |
10615466 |
atccccaccaccgacatcgtcgaaaacctcgtcg |
10615433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 155 - 281
Target Start/End: Original strand, 46469763 - 46469889
Alignment:
| Q |
155 |
aacgtaaactccctcttcaccctcggcgtattcatcggcctctccttcaacccaaacgacccttccaacactctcaacacagacccctcctgtgtcccca |
254 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||| |||||||||||||| ||||||||| | |||||||||||||| | |||| ||||| |||||| |
|
|
| T |
46469763 |
aacgtaaactccctcttcactctcggcatattcatcgacctctccttcaacctaaacgaccccttcaacactctcaacataaacccgtcctgcatcccca |
46469862 |
T |
|
| Q |
255 |
ccaccgccatcgccgaaaacctcgtcg |
281 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
46469863 |
ccaccgacatcgccgaaaacctcgtcg |
46469889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University