View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13213_low_2 (Length: 572)
Name: NF13213_low_2
Description: NF13213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13213_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 183 - 557
Target Start/End: Original strand, 25525714 - 25526088
Alignment:
| Q |
183 |
gtgaaaagtagatgaacaatctaattaactaatttggcataaataaaagcattattgacttcaaaacctgctatcactcttctcttcacgtgaaacaaat |
282 |
Q |
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| T |
25525714 |
gtgaaaagtagatgaacaatctaattaactaatttggcataaataaaagcattattgacttcaaaacctgctatcactcttctcttcacgtgaaacaaat |
25525813 |
T |
|
| Q |
283 |
aaaggaaggtaacctacatgaggatcatctctctattgtttcaacctctccccgcccctttcaccttaataatcaatccatctgttgtgtacaaagcagt |
382 |
Q |
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| T |
25525814 |
aaaggaaggtaaactacatgaggatcatctctctattgtttcaacctctccccgcccctttcaccttaataatcaatccatctgttgtgtacaaagcagt |
25525913 |
T |
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| Q |
383 |
aatatgtataccaatccatcctttttatacagctaggtattgtatcctatagcatgcaagaaaaataaacctttagaatcctgcactaagaaatctaaat |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25525914 |
aatatgtataccaatccatcctttttatacagctaggtattgtatcctatagcatgcaagaaaaataaacctttagaatcctgcactaagaaatctaaat |
25526013 |
T |
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| Q |
483 |
gcttcaaaagataatttacaaaatagccaaacttgatacagtgttgcgtctaaatgcttctaacgacatatttgt |
557 |
Q |
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| T |
25526014 |
gcttcaaaagatcatttacaaaatagccaaacttgatacagtgttgcgtctaaatgcttctaacgacatatttgt |
25526088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 25525552 - 25525641
Alignment:
| Q |
21 |
ccaaaacagaaatcagaaactaagatgcatacatataaagcacgttgcagatgagaaaatgaaaacaactaaactggtataaacaggtga |
110 |
Q |
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| T |
25525552 |
ccaaaacagaaatcagaaactaagatgcatacatataaagcacgttgcagatgagaaaatgaaaacaactaaactggtataaacaggtga |
25525641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 500 - 557
Target Start/End: Original strand, 25534033 - 25534090
Alignment:
| Q |
500 |
acaaaatagccaaacttgatacagtgttgcgtctaaatgcttctaacgacatatttgt |
557 |
Q |
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| T |
25534033 |
acaaaatagccaaacttgatacagtgttgcgtctaaatgcttctaacaacatatttgt |
25534090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 273 - 364
Target Start/End: Complemental strand, 25516566 - 25516476
Alignment:
| Q |
273 |
tgaaacaaataaaggaaggtaacctacatgaggatcatctctctattgtttcaacctctccccgcccctttcaccttaataatcaatccatc |
364 |
Q |
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| T |
25516566 |
tgaaacacataaaggaaggtaaataacatggggatcatctctctattgttccaacctc-accagtccctttcaccttaataatcaatccatc |
25516476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 522
Target Start/End: Complemental strand, 25516452 - 25516349
Alignment:
| Q |
419 |
gtattgtatcctatagcatgcaagaaaaataaacctttagaatcctgcactaagaaatctaaatgcttcaaaagataatttacaaaatagccaaacttga |
518 |
Q |
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||||| ||||||||| | |||||||||||||| | ||||| || | || |||||| ||||||||||||| |||||||||||||||| ||||||| || |
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| T |
25516452 |
gtattatatcctatatctagcaagaaaaataaatccatagaaacccaccctgagaaatttaaatgcttcaaaggataatttacaaaataaccaaactaga |
25516353 |
T |
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| Q |
519 |
taca |
522 |
Q |
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|||| |
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| T |
25516352 |
taca |
25516349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 520
Target Start/End: Original strand, 47444758 - 47444805
Alignment:
| Q |
473 |
aaatctaaatgcttcaaaagataatttacaaaatagccaaacttgata |
520 |
Q |
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| T |
47444758 |
aaatctaaatgcttcaaaagataatgtacaacataaccaaactagata |
47444805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 25539212 - 25539248
Alignment:
| Q |
69 |
agatgagaaaatgaaaacaactaaactggtataaaca |
105 |
Q |
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| T |
25539212 |
agatgagaaaatgaaaacaactaaactcgcataaaca |
25539248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 473 - 520
Target Start/End: Complemental strand, 27124067 - 27124020
Alignment:
| Q |
473 |
aaatctaaatgcttcaaaagataatttacaaaatagccaaacttgata |
520 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
27124067 |
aaatctaaatgcttcaaaagataatttacaaaaaaaccaaacttgata |
27124020 |
T |
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