View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13213_low_3 (Length: 380)

Name: NF13213_low_3
Description: NF13213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13213_low_3
NF13213_low_3
[»] chr4 (12 HSPs)
chr4 (1-380)||(4350626-4351001)
chr4 (267-380)||(4126669-4126782)
chr4 (260-380)||(4333202-4333322)
chr4 (298-380)||(4342630-4342712)
chr4 (299-380)||(4358099-4358180)
chr4 (299-380)||(4323334-4323415)
chr4 (291-379)||(4135777-4135865)
chr4 (190-380)||(4330067-4330256)
chr4 (292-337)||(25567605-25567650)
chr4 (298-352)||(6535899-6535953)
chr4 (298-367)||(6713477-6713546)
chr4 (89-133)||(4323502-4323546)
[»] chr3 (1 HSPs)
chr3 (299-377)||(48015540-48015618)
[»] chr6 (16 HSPs)
chr6 (299-367)||(5356867-5356935)
chr6 (299-377)||(5105113-5105191)
chr6 (299-377)||(5423436-5423514)
chr6 (299-380)||(5368143-5368224)
chr6 (293-380)||(5093724-5093811)
chr6 (299-377)||(5069312-5069390)
chr6 (299-376)||(5184188-5184265)
chr6 (292-370)||(5341376-5341454)
chr6 (299-377)||(5394732-5394810)
chr6 (299-380)||(5075963-5076044)
chr6 (299-380)||(5159733-5159814)
chr6 (290-377)||(5149197-5149284)
chr6 (299-380)||(5174555-5174636)
chr6 (318-380)||(5431115-5431177)
chr6 (299-332)||(5262420-5262453)
chr6 (299-376)||(5444775-5444852)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 4350626 - 4351001
Alignment:
Q  1 ttgttagactgtctgtggtttccaattttaggactaattgactctcagccccctgttaggataatcaacttaattcgcacgtacactttgcttatttggt 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  4350626 ttgttagactgtc-gtggtttccaattttaggactaattgactctcggcccc-tgttaggataatcaacttaatttgcacgtacagtttgcttctttggt 4350723  T
Q  101 catcactttcaatctaattgcgcctttttgtaatgattcagctttacacacacaatcaaacaataannnnnnnactcgaattccccctgtacttttgaca 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||        |||| ||||||||| |||||||||||    
T  4350724 catcactttcaatctaattgcgcctttttataatgattcagctttacacacacaatccaacaataaattttttcctcggattccccctatacttttgaca 4350823  T
Q  201 caggcatacataggtaattacttatacataaacacataaatatacataaacccatatgctgtgtgtatatgtaaatttaccctttctttgttttttaata 300  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||    
T  4350824 catgcatacataggtaattacttatacataaacacataaatatacataaacccatatgttgtg--tatatgtaaatttaccctttctttgttttttaata 4350921  T
Q  301 ggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgat 380  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| |||||| ||||||| ||||    
T  4350922 ggaatgaaagtgaggttatcaagggtattgttgaaaatattacacgtttgtttgacaagatagacttattcattgttgat 4351001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 267 - 380
Target Start/End: Complemental strand, 4126782 - 4126669
Alignment:
Q  267 atatgtaaatttaccctttctttgttttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagact 366  Q
    ||||| ||||||||| ||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  4126782 atatgcaaatttaccatttctttgtattttcataggaacgaatgtgaggttatcaaggatattgttgaaaatgttacaaatttgcttgacaagacagact 4126683  T
Q  367 tgttcattgctgat 380  Q
    ||||||||||||||    
T  4126682 tgttcattgctgat 4126669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 260 - 380
Target Start/End: Original strand, 4333202 - 4333322
Alignment:
Q  260 tgtgtgtatatgtaaatttaccctttctttgttttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaag 359  Q
    ||||||| | ||||||| | || |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  4333202 tgtgtgtgtgtgtaaatgttccatttctttgttttttcataggaacgaaagtgaggtcatcaaggatattgttgaaaatgttgcacgtttgcttgacaag 4333301  T
Q  360 acagacttgttcattgctgat 380  Q
    || ||||||||||||||||||    
T  4333302 actgacttgttcattgctgat 4333322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 4342630 - 4342712
Alignment:
Q  298 ataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgat 380  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4342630 ataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgat 4342712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 299 - 380
Target Start/End: Original strand, 4358099 - 4358180
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgat 380  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4358099 taggaatgaaagtgaggttatcagggatattgttgaaaatgttactcgtttgcttgacaagacagacttgttcattgctgat 4358180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 4323415 - 4323334
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgat 380  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||    
T  4323415 taggaacgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttactggacaagacagacttgttcgttgctgat 4323334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 4135865 - 4135777
Alignment:
Q  291 ttttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctga 379  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||    
T  4135865 ttttttcataggaacgaaagtgaggatatcaaggatattgttgaaaaagttacacatttgcttgacaagacagacctgttcattgctga 4135777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 190 - 380
Target Start/End: Original strand, 4330067 - 4330256
Alignment:
Q  190 tacttttgacacaggcatacataggtaattacttatacataaacacataaatatacataaacccatatgctgtgtgtatatgtaaatttaccctttcttt 289  Q
    ||||||||||||| |||||||||||| ||||||||||  |||||||||| |||| |||| |   ||   |    |||| |||||||| |||| | |||||    
T  4330067 tacttttgacacatgcatacataggtcattacttatatgtaaacacatagatatccatatatgtatggaca---tgtaaatgtaaatgtaccatctcttt 4330163  T
Q  290 gttttt--taataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgat 380  Q
    ||||||  | ||||||||||||| || ||||||||| ||||||||||||||||||||| ||| ||||| |||| |||||| ||||||||||||    
T  4330164 gtttttctttataggaatgaaagagaagttatcaagaatattgttgaaaatgttacactttttcttgataagatagacttattcattgctgat 4330256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 25567605 - 25567650
Alignment:
Q  292 tttttaataggaatgaaagtgaggttatcaaggatattgttgaaaa 337  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||    
T  25567605 tttttaacaggaatgaaagtgaggctatcaaggatattgttgaaaa 25567650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 6535953 - 6535899
Alignment:
Q  298 ataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgct 352  Q
    |||||||||||||||| | ||||||| || |||||||| ||||||| ||||||||    
T  6535953 ataggaatgaaagtgatgatatcaagaatgttgttgaacatgttactcgtttgct 6535899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 6713477 - 6713546
Alignment:
Q  298 ataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagactt 367  Q
    |||||||||||||||  | ||||||| |||| |||||| |||| || |||||||| || |||||||||||    
T  6713477 ataggaatgaaagtgcagatatcaagaatatagttgaacatgtcacccgtttgctagataagacagactt 6713546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 4323546 - 4323502
Alignment:
Q  89 tgcttatttggtcatcactttcaatctaattgcgcctttttgtaa 133  Q
    ||||| |||||||| ||||||||||||||||||  ||||||||||    
T  4323546 tgcttctttggtcaacactttcaatctaattgcaactttttgtaa 4323502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 48015618 - 48015540
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgct 377  Q
    |||||||||||| |||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  48015618 taggaatgaaagcgaggttattaaagatattgttgaaaatattacacgattgcttgacaagacagacttgtttattgct 48015540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 5356935 - 5356867
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagactt 367  Q
    ||||||||||||||| | |||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  5356935 taggaatgaaagtgaagctatcaaggatattgttaaaaatattacacgtttgcttgacaagacagactt 5356867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 5105191 - 5105113
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgct 377  Q
    |||||||||||||||||||||||||||||||||| | ||||| || | |||||||||||||||||| ||||| ||||||    
T  5105191 taggaatgaaagtgaggttatcaaggatattgttaacaatgtaacgcatttgcttgacaagacagatttgtttattgct 5105113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 5423436 - 5423514
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgct 377  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||| |||  ||||||||||||||| ||||| ||||||    
T  5423436 taggaatgaaagtgaggctattaaggatattgttgaaaatgttacgcgtaagcttgacaagacagatttgtttattgct 5423514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 380
Target Start/End: Original strand, 5368143 - 5368224
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgat 380  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||| |||  ||||||||||||||| ||||| |||||||||    
T  5368143 taggaatgaaagtaaggctatccaggatattgttgaaaatgttacgcgtaagcttgacaagacagaattgtttattgctgat 5368224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 293 - 380
Target Start/End: Original strand, 5093724 - 5093811
Alignment:
Q  293 ttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgat 380  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||  |||| | ||||||||| |||||||| |||||||||||||||    
T  5093724 ttttaataggaatgaaaataaggccatcaaggatattgttgaaaaaattactcatttgcttgataagacagatttgttcattgctgat 5093811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 5069390 - 5069312
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgct 377  Q
    ||||||||||||||| |||||  |||||||||||||||||||||| |||  |||||||||| |||||||||| ||||||    
T  5069390 taggaatgaaagtgatgttatagaggatattgttgaaaatgttacgcgtaagcttgacaaggcagacttgtttattgct 5069312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 5184265 - 5184188
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgc 376  Q
    |||||||||||||||||  ||||| || ||||||||||||||||||| |||||| | ||||||||| |||||||||||    
T  5184265 taggaatgaaagtgaggcaatcaaagacattgttgaaaatgttacacatttgctaggcaagacagatttgttcattgc 5184188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 370
Target Start/End: Original strand, 5341376 - 5341454
Alignment:
Q  292 tttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgtt 370  Q
    ||||| ||||||||||||| |||| |||||||||||| || ||||| ||||| || |||||| ||||||||||||||||    
T  5341376 ttttttataggaatgaaagcgaggctatcaaggatatcgtcgaaaaagttacgcgcttgcttaacaagacagacttgtt 5341454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 5394732 - 5394810
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgct 377  Q
    ||||||||||||||| |  ||||| || |||||||||||| || |||||||||||||||| ||||||||||| ||||||    
T  5394732 taggaatgaaagtgacgcaatcaatgacattgttgaaaatatttcacgtttgcttgacaaaacagacttgtttattgct 5394810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 5076044 - 5075963
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgat 380  Q
    ||||||||||||||| |  ||| | ||||| || |||||| || |||||||||||||||||||||| |||||||||||||||    
T  5076044 taggaatgaaagtgaagcaatcgacgatatagtggaaaatatttcacgtttgcttgacaagacagatttgttcattgctgat 5075963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 5159814 - 5159733
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgat 380  Q
    ||||||| ||| | |||| ||||||||||||||||||||  |||| | ||||||||| |||||||| |||||||||||||||    
T  5159814 taggaatcaaaataaggtcatcaaggatattgttgaaaaaattactcatttgcttgataagacagatttgttcattgctgat 5159733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 377
Target Start/End: Complemental strand, 5149284 - 5149197
Alignment:
Q  290 gttttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgct 377  Q
    |||||| |||||||| ||||||||| | |||| | ||||||||||||| ||||| |  ||||| |||||||| ||||||||| |||||    
T  5149284 gtttttaaataggaacgaaagtgagatcatcaggaatattgttgaaaaagttactcacttgctagacaagaccgacttgttcgttgct 5149197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 380
Target Start/End: Original strand, 5174555 - 5174636
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgat 380  Q
    ||||||||||||||| |  || ||| |||||||||| || ||| |||||||  |||||||||||||||||||  ||||||||    
T  5174555 taggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattgacaagacagacttgtttgttgctgat 5174636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 5431115 - 5431177
Alignment:
Q  318 atcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgat 380  Q
    ||||||||||||  ||||||  |||| | |||||||||||||| |||| ||||||||||||||    
T  5431115 atcaaggatattactgaaaaaattactcatttgcttgacaagaaagacatgttcattgctgat 5431177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 5262453 - 5262420
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgtt 332  Q
    ||||||||||||||||| ||||||||||||||||    
T  5262453 taggaatgaaagtgaggatatcaaggatattgtt 5262420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 5444775 - 5444852
Alignment:
Q  299 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgc 376  Q
    ||||||||||||||||| | |||| | ||||||||| ||  || ||| ||||||| |||| ||||||||||| |||||    
T  5444775 taggaatgaaagtgaggatgtcaaaggtattgttgacaacatttcacatttgcttaacaaaacagacttgtttattgc 5444852  T

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