View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_high_1 (Length: 807)
Name: NF13214_high_1
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 364
Target Start/End: Original strand, 46951541 - 46951899
Alignment:
| Q |
8 |
attattctttgggaacacacaatcatgaattttgagatattttcgcatcaaacgaacgagtcaagatcctccattttgtgaacatgttattgtatttagg |
107 |
Q |
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| T |
46951541 |
attattctttgggaacacacaatcatgaatgttgagatattttcgcatcaaacgaacgagtcaagatcctccattttgtgaacatgttattgtatttagg |
46951640 |
T |
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| Q |
108 |
ttcttccctttatttataataacataatactctctatctaagtgaatttttggattatgtgcacattttaattact--tcaagttaacgcactgagatga |
205 |
Q |
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| T |
46951641 |
ttcttccctttatttataataacataatactctctatctaagtgaatttttggattatgtgcacattttaattacttctcaagttaacgcaccgagatga |
46951740 |
T |
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| Q |
206 |
attatgnnnnnnntactagaaaaatatatttaatatgaatcttgatctaatataaaaacttgtggtgaatggacaagattggttttaaaggagtattagt |
305 |
Q |
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| T |
46951741 |
attatgaaaaaaatactagaaaaatatatttaatatgaatcttcatctaatataaaaacttgtggtgaatggacaagattgattttaaaggagtattagt |
46951840 |
T |
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| Q |
306 |
atgtaatgtaacaactagtgaccccgaagtaaatgatgagtgagctagtgagaatgagc |
364 |
Q |
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| T |
46951841 |
atgtaatgtaacaactagtgaccccgaagtaaatgatgagtgagctagtgagaatgagc |
46951899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 401 - 793
Target Start/End: Original strand, 46951950 - 46952341
Alignment:
| Q |
401 |
gcagaatgaatggtagtgagtgaacatagatctagaggtagagttcgtcgaaagggatatgaagtaatttttatgatatccccctctttgtctgaacttc |
500 |
Q |
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| T |
46951950 |
gcagaatgaatggtagtgagtgaacatagatctagaggtagagttcgtcgaaagggatatgaagtagttttgatgatatctctctctctctctcaacttc |
46952049 |
T |
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| Q |
501 |
ttctgttactcaactatactacttactcctcaatttcactctaattttataagttaagtttttcctagttcaatcaaattgttctactctataatgagaa |
600 |
Q |
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| T |
46952050 |
ttctgta------------tagctactcctcaatttcactctaattttataagttaagtttttcctagttcaatcaaattgtactactctataataagaa |
46952137 |
T |
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| Q |
601 |
tagcgtaagatgagtaactatatctttttaggaacataaaattaatcacgtgtctttcggatatacaacaaaggatatatttttgtttgtgataccttaa |
700 |
Q |
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| T |
46952138 |
tagcgtaagatgagtaactatatctttttaggaacataaaattaatcacgtgtctttcggatatacaacaaaggatatatttctgtttgtgataccttaa |
46952237 |
T |
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| Q |
701 |
acagcaaatggaacttgtaaggatattggttggtagttggttcaagtacaattgatg-----------atgaggtaatggttgttgccttataaatgata |
789 |
Q |
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| T |
46952238 |
acaacaaatggaacttgtaaggatactggttggtagttggttcaagtacaattgatgatagaatacacattaggtaatggttgttgccttataaatgata |
46952337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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