View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_high_19 (Length: 324)
Name: NF13214_high_19
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 23110742 - 23110444
Alignment:
| Q |
10 |
aatatctagtgatataagactagcactgcaacccattgcggtgagattgtacacttttacgtcgtgtctcattttgtaacggttaatgattcgcgacgat |
109 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23110742 |
aatatctagtgaaataagactagcactgcaacccattgcggtgagattgtacacttttacgtcgtgtctcattttgtaacggttaatgattcgcgacgat |
23110643 |
T |
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| Q |
110 |
aaagaaggaagaacggagagcattgcgatgttgacgacaagaacgtcaattttggaagggcaaatccctgaccttgatagaagttttgcaatgctgtcgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23110642 |
aaagaaggaagaacggagagcattgcgatgttgacgacaagaacatcaatttcggaagggcaaatccctgaccttgatagaagttttgcaatgctgtcgt |
23110543 |
T |
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| Q |
210 |
caaaaaattcttccatctctgagatcccgtctttcaatgttggggatgcttcgcggccttcaaagacgtttcttggggcgtaagtttgttcgccaatac |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23110542 |
caaaaaattcttccatctctgagatcccgtctttcaatgttggggatgcttcgcggccttcaaagacgtttcttggggcgtaagtttgttcgccaatac |
23110444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 23073619 - 23073915
Alignment:
| Q |
10 |
aatatctagtgatataagactagcactgcaacccattgcggtgagattgtacacttttacgtcgtgtctcattttgtaacggttaatgattcgcgacgat |
109 |
Q |
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|||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23073619 |
aatatctaatgatataagacttgcactacaacccattccggtgagattgtacacttttacgtcgtgtctcattttgtaacggttaatgattcgcgaagat |
23073718 |
T |
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| Q |
110 |
aaagaaggaagaacggagagcattgcgatgttgacgacaagaacgtcaattttggaagggcaaatccctgaccttgatagaagttttgcaatgctgtcgt |
209 |
Q |
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||||||||||||| || |||||||| ||||||||||||||||| ||| |||| ||||||| ||||| |||| || | ||| ||||| ||||||||||||| |
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| T |
23073719 |
aaagaaggaagaatggcgagcattgagatgttgacgacaagaatgtcgatttcggaaggggaaatcgctgatctagctaggagtttcgcaatgctgtcgt |
23073818 |
T |
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| Q |
210 |
caaaaaattcttccatctctgagatcccgtctttcaatgttggggatgcttcgcggccttcaaagacgtttcttggggcgtaagtttgttcgccaat |
306 |
Q |
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||||| ||||||||||| ||||||||||| |||| |||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
23073819 |
tgaaaaactcttccatctcagagatcccgtcgttcagtgttggtgatgattcgcggccttcaaagacatttcttggtgcgtaagtttgttcgccaat |
23073915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 23078227 - 23078523
Alignment:
| Q |
10 |
aatatctagtgatataagactagcactgcaacccattgcggtgagattgtacacttttacgtcgtgtctcattttgtaacggttaatgattcgcgacgat |
109 |
Q |
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|||||||| |||||||||||||||||| ||||||||| | |||| |||||||||||||||||||||||||| ||||||||| |||||||| |||||||| |
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| T |
23078227 |
aatatctactgatataagactagcactacaacccattccagtgatattgtacacttttacgtcgtgtctcagtttgtaacgattaatgataagcgacgat |
23078326 |
T |
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| Q |
110 |
aaagaaggaagaacggagagcattgcgatgttgacgacaagaacgtcaattttggaagggcaaatccctgaccttgatagaagttttgcaatgctgtcgt |
209 |
Q |
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| || |||| | || || ||||| ||||||||| |||||||| || |||| ||||||| || | |||| |||| || ||||||||||||||||||| |
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| T |
23078327 |
agtgagggaacagaggtgaacattgagatgttgacaacaagaacatcgatttcggaaggggaagtagctgatcttgcaaggagttttgcaatgctgtcgt |
23078426 |
T |
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| Q |
210 |
caaaaaattcttccatctctgagatcccgtctttcaatgttggggatgcttcgcggccttcaaagacgtttcttggggcgtaagtttgttcgccaat |
306 |
Q |
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| ||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
23078427 |
cgaaaaactcttccatctctgagatcccgtcgttcagcgttggtgatgcttcgcggccttcaatgacatttcttggggcgtaagtttgttcgccaat |
23078523 |
T |
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