View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13214_high_21 (Length: 277)

Name: NF13214_high_21
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13214_high_21
NF13214_high_21
[»] chr8 (6 HSPs)
chr8 (18-268)||(12051336-12051587)
chr8 (32-268)||(12030219-12030455)
chr8 (82-147)||(26006778-26006843)
chr8 (79-164)||(40175146-40175231)
chr8 (82-132)||(19755325-19755375)
chr8 (84-124)||(43234227-43234267)
[»] chr1 (1 HSPs)
chr1 (81-171)||(31592358-31592448)
[»] chr2 (1 HSPs)
chr2 (79-161)||(16349459-16349541)
[»] chr7 (2 HSPs)
chr7 (82-159)||(21223039-21223116)
chr7 (81-171)||(34899118-34899215)
[»] chr4 (2 HSPs)
chr4 (79-123)||(653783-653827)
chr4 (84-164)||(28031560-28031640)
[»] chr3 (1 HSPs)
chr3 (80-164)||(27764282-27764364)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 12051587 - 12051336
Alignment:
Q  18 ctttaatggttgatatggtcatatgctgcatactttttcttatgtttgttttgcttcttagaagagaaaacataatgcatttcatttaaaataagagtag 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12051587 ctttaatggttgatatggtcatatgttgcatactttttcttatgtttgttttgtttcttagaagagaaaacataatgcatttcatttaaaataagagtag 12051488  T
Q  118 tgatacatgatagaactcaaatg-aaaatacgaaaactaacatgacattgagctagatcataagaaataaggcgtcgatagtcattaataattgacgtaa 216  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||    
T  12051487 tgatacatgatagaactcaaatgaaaaatacgaaaactaacatgacattgagctagatcataagaaataaggcatcgacaatcattaataattgacgtaa 12051388  T
Q  217 aatctgagaaaccaagtgaacaaccatagatacagtcaaccaccacctttga 268  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12051387 aatctgagaaaccaagtgaacaaccatagatacagtcaaccactacctttga 12051336  T

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Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 32 - 268
Target Start/End: Complemental strand, 12030455 - 12030219
Alignment:
Q  32 atggtcatatgctgcatactttttcttatgtttgttttgcttcttagaagagaaaacataatgcatttcatttaaaataagagtagtgatacatgataga 131  Q
    ||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |    
T  12030455 atggtcatatgttgcatactttttcttttgtttgttttgtttattagaagagaaaacttaatgcatgtcatttaaaataagagtagtgatacatgataca 12030356  T
Q  132 actcaaatgaaaatacgaaaactaacatgacattgagctagatcataagaaataaggcgtcgatagtcattaataattgacgtaaaatctgagaaaccaa 231  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||    
T  12030355 actcaaatgaaaatacgaaaactaacatgccattgagctagatcataagaaataaggcgtcgacaatcattaataattgacgtaaaatttgagaaaccaa 12030256  T
Q  232 gtgaacaaccatagatacagtcaaccaccacctttga 268  Q
    |||||||||||||||||||||||||||||||||||||    
T  12030255 gtgaacaaccatagatacagtcaaccaccacctttga 12030219  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 26006778 - 26006843
Alignment:
Q  82 agaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatac 147  Q
    ||||||| |||||||||||||||||||||||||||| ||| || ||| ||| ||||||||||||||    
T  26006778 agaaaacttaatgcatttcatttaaaataagagtagagatgcaagatggaattcaaatgaaaatac 26006843  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 40175146 - 40175231
Alignment:
Q  79 aagagaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatacgaaaactaacatgacat 164  Q
    |||||||| | ||||||| |||||||||| ||||||||| | |||||||| ||| ||||||||||||| | |||| ||||||||||    
T  40175146 aagagaaagcctaatgcaattcatttaaagtaagagtagaggtacatgatggaattcaaatgaaaatatggaaaccaacatgacat 40175231  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 19755375 - 19755325
Alignment:
Q  82 agaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaa 132  Q
    ||||||| ||||||||||||||| || ||| ||||| ||||||||||||||    
T  19755375 agaaaacttaatgcatttcattttaattaaaagtagggatacatgatagaa 19755325  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 43234267 - 43234227
Alignment:
Q  84 aaaacataatgcatttcatttaaaataagagtagtgataca 124  Q
    ||||| |||||||||| ||||||||||||||||| ||||||    
T  43234267 aaaacttaatgcatttgatttaaaataagagtagagataca 43234227  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 31592448 - 31592358
Alignment:
Q  81 gagaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatacgaaaactaacatgacattgagcta 171  Q
    |||||||  ||||||||||||||||||| |||||||| |||||| ||| ||| || |||||||||||| |||||| |||||||| ||||||    
T  31592448 gagaaaatttaatgcatttcatttaaaaaaagagtagagatacaagatggaattcgaatgaaaatacggaaactagcatgacatggagcta 31592358  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 16349459 - 16349541
Alignment:
Q  79 aagagaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatacgaaaactaacatga 161  Q
    |||||||| | |||||||||||||||||||||||||||  ||||||||||  || ||||||||| |||| ||||||| |||||    
T  16349459 aagagaaatcttaatgcatttcatttaaaataagagtatagatacatgatgaaattcaaatgaacatacaaaaactagcatga 16349541  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 21223039 - 21223116
Alignment:
Q  82 agaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatacgaaaactaacat 159  Q
    ||||||| ||||| |||||||||||||||||| ||| |||||| ||| ||| ||||||||||||||| ||| ||||||    
T  21223039 agaaaacttaatgtatttcatttaaaataagaatagagatacaagatggaattcaaatgaaaatacggaaagtaacat 21223116  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 34899215 - 34899118
Alignment:
Q  81 gagaaaacataatgcatttcatttaaaataagag-------tagtgatacatgatagaactcaaatgaaaatacgaaaactaacatgacattgagcta 171  Q
    |||||||  |||||||||||||||||||||||||       ||| |||||| ||| ||| |||||||||||||| |||||||||||||||| ||||||    
T  34899215 gagaaaatttaatgcatttcatttaaaataagagcagagattagagatacaagatggaattcaaatgaaaatacaaaaactaacatgacatggagcta 34899118  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 653827 - 653783
Alignment:
Q  79 aagagaaaacataatgcatttcatttaaaataagagtagtgatac 123  Q
    |||||||||| |||||||||||||||||||||||||||| |||||    
T  653827 aagagaaaacttaatgcatttcatttaaaataagagtagagatac 653783  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 28031640 - 28031560
Alignment:
Q  84 aaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatacgaaaactaacatgacat 164  Q
    ||||| |||| ||||| ||||||||||| ||||| |||||| |||  || |  ||||||||||||||||||| ||||||||    
T  28031640 aaaacttaatacattttatttaaaataaaagtagagatacaagatgaaatttgaatgaaaatacgaaaactagcatgacat 28031560  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 164
Target Start/End: Complemental strand, 27764364 - 27764282
Alignment:
Q  80 agagaaaacataatgcatttcatttaaaataagagtagtgatacatgatagaactcaaatgaaaatacgaaaactaacatgacat 164  Q
    ||||||||  ||||||||||||||||||||  |||| | |||||| ||| ||| |||||| |||||||  |||||| ||||||||    
T  27764364 agagaaaatttaatgcatttcatttaaaat--gagttgagatacaagatggaattcaaataaaaatacataaactagcatgacat 27764282  T

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