View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13214_high_23 (Length: 270)
Name: NF13214_high_23
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_high_23 |
 | |
|
| [»] scaffold0169 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0169 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 26313 - 26070
Alignment:
| Q |
10 |
attatactaatttatatttttcaacaagtatgatattgcttggctatagaaaatgagcatggatactacaaacatttgattagaaaaccaatctttaaag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26313 |
attatactaatttatatttttcaacaagtatgatattgcttggctatagaaaatgagcatggatactacaaacatttgattagaaaaccaatctttaaag |
26214 |
T |
|
| Q |
110 |
gtaaaagagaagacgacattgcaacgactttcctgtattctcaatttctcatcaaaatataaatagataaattcaaatcattaggaaaagaactatttca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26213 |
gtaaaagagaagacgacattgcaacgactttcctgtattctcaatttctcatcaaaatataaatagataaattcaaatcattaggaaaagaactatttca |
26114 |
T |
|
| Q |
210 |
cttagccaacaagccattttggctgtaattttgaaccttgtgta |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26113 |
cttagccaacaagccattttggctgtaattttgaaccttgtgta |
26070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 4443444 - 4443217
Alignment:
| Q |
10 |
attatactaatttatatttttcaacaagtatgatattgcttggctatagaaaatgagcatggatactacaaacatttgattagaaaaccaatctttaaag |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||| ||||||| |||||| |||| ||||||||||| |||| |||| |||||||||||| |
|
|
| T |
4443444 |
attatactaatttatatttttcaacgagtatgatggtgcttg-ctatagataatgagagtggacactacaaacat--gatttgaaagtcaatctttaaag |
4443348 |
T |
|
| Q |
110 |
gtaaaagagaagacgacattgcaacgactttcctgtattctcaatttctcatcaaaatataaatagataaattcaaatcattaggaaaagaactatttca |
209 |
Q |
| |
|
|| ||| ||||||| ||||||||||| ||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4443347 |
gttaaaat-----cgacatttcaacgactttcttgtgttctcc--------tcaaaatacaaatagataaattcaaatcaataggaaaagaactatttca |
4443261 |
T |
|
| Q |
210 |
cttagccaacaagccattttggctgtaattttgaaccttgtgta |
253 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
4443260 |
cttagccaacaagccatcttggctgtaatattgaaccttgtgta |
4443217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 4467386 - 4467329
Alignment:
| Q |
196 |
aaagaactatttcacttagccaacaagccattttggctgtaattttgaaccttgtgta |
253 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
4467386 |
aaagacctatttcacttggccaacaagccatcttggttgtaattttgaaccttatgta |
4467329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 8365231 - 8365309
Alignment:
| Q |
74 |
actacaaacatttgattagaaaaccaatctttaaaggtaaaagagaaga-cgacattgcaacgactttcctgtattctc |
151 |
Q |
| |
|
||||||||||| |||||||||| ||| | ||||||| |||||||||||| | ||||| ||| | ||||||||||||||| |
|
|
| T |
8365231 |
actacaaacatgtgattagaaagccattttttaaagttaaaagagaagatcaacatttcaatggctttcctgtattctc |
8365309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University