View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_high_25 (Length: 250)
Name: NF13214_high_25
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 33783677 - 33783589
Alignment:
| Q |
16 |
atgcaaacaaacaggagaaactaaatacagtagtcaaatgctatgctcctgacttttttaagctaaaaacaaaaggcaccaaaccaagt |
104 |
Q |
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| T |
33783677 |
atgcaaccaaacaggagaaactaaatacagtagtcaaatgctatgctcctgacttttttaatctaaaaacaagaggcaccaaaccaagt |
33783589 |
T |
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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 33783592 - 33783525
Alignment:
| Q |
131 |
aagtgatcactaccttcaattcattatacattc-ttctttaacccttaaccatcagacatcactctca |
197 |
Q |
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| T |
33783592 |
aagtgatcactaccttcaattcattatacattccttctttaacccttaaccatcagacatcactctca |
33783525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 33783525 - 33783490
Alignment:
| Q |
215 |
ataaagtagttcgtcaaacatatgaaaatccatcaa |
250 |
Q |
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| T |
33783525 |
ataaagtagttcgtcaagcatatgaaaatccatcaa |
33783490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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