View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_high_26 (Length: 250)
Name: NF13214_high_26
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_high_26 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 2821326 - 2821575
Alignment:
| Q |
1 |
aagattggtgagaactttacttcatctcttgtaataataatcaaaaccatttcatttgaatgaatttgtttattcggctaatcaagattgatgcaaatgc |
100 |
Q |
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| T |
2821326 |
aagattggtgagaactttacttcatctcttgtaataataatcaaaaccatttcatttgaatgaatttgtttattcggctaatcaagattgatgctaatgc |
2821425 |
T |
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| Q |
101 |
tgctatcattacccagctgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgtatgtgtctcagccaaccggtttcatccaccc |
200 |
Q |
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| T |
2821426 |
tgctatcattacccagctgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgtatgtgtctcagccaaccggtttcatccaccc |
2821525 |
T |
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| Q |
201 |
atcatttcttgattatttttgaaagctgaaaaaggaagtgtaagaatcat |
250 |
Q |
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| T |
2821526 |
atcatttcttgattatttttgaaagctgaaaaaggaagtgtaagaatcat |
2821575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 2834994 - 2834828
Alignment:
| Q |
32 |
taataataatcaaaaccatttcatttgaatgaatttgtttattcggctaatcaagattgatgcaaatgctgctatcattacccagctgtaaatttatatg |
131 |
Q |
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| T |
2834994 |
taataataatcaaaaccacttcatatgaatgaatatttttattttgctaaccacgatcgatgcta------ctatcgttatgtagctgtaaatttaaacg |
2834901 |
T |
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| Q |
132 |
cctagttgatttgaagttaatcaggaggacatgtatgtatgtgtctcagccaaccggtttcatccacccatcatttc |
208 |
Q |
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| T |
2834900 |
cctagttgatttaaagtaaatctggacga----tatgtatgcgtctcagccaaccggtttcatccatccatcatttc |
2834828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 2771858 - 2771991
Alignment:
| Q |
32 |
taataataatcaaaaccatttcatttgaatgaatttgtttattcggctaatcaagattgatgcaaatgctgctatcattacccagctgtaaatttatatg |
131 |
Q |
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| T |
2771858 |
taataataatcaaaactacttcattcaaatgaatatgtttattttgctaaccaagcttgatgcta------ctatcataatctagctgtaactataaagg |
2771951 |
T |
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| Q |
132 |
cctagttgatttgaagttaatcaggaggacatgtatgtat |
171 |
Q |
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| T |
2771952 |
cctagttgatttgaagttaatcgagaggatatgtatgtat |
2771991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 11114630 - 11114579
Alignment:
| Q |
118 |
tgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgt |
169 |
Q |
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| T |
11114630 |
tgtaaatttagatgtgtggttgatttgaagttaatcagaaggacatgtatgt |
11114579 |
T |
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