View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13214_high_3 (Length: 597)
Name: NF13214_high_3
Description: NF13214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13214_high_3 |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 6 - 581
Target Start/End: Original strand, 9581237 - 9581808
Alignment:
| Q |
6 |
agccccacaccctgacatgcaatccatttcagtatcttggagaactcaccgccgcagaagattgtcttttgtaggaagtctgtttcttagaaatcgccac |
105 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
9581237 |
agccccacaccctgacacgcaatccgtttcagtatcttggagaactcaccgccgcagaagattgtcttttgtaggaagcctgtttcttagaagtcgccat |
9581336 |
T |
|
| Q |
106 |
acaaatagagacacctttgacggaatgaactaaaatcatttgttttcnnnnnnnccaatgtctgcctattaagatgacctctacgagaagctgagagtag |
205 |
Q |
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| T |
9581337 |
ataaatagagacacctttgacggaatgaactaaaatcatttgttttcaaaaaaaccaatgtctgcctattaagatgacctctacgagaagctgagagtag |
9581436 |
T |
|
| Q |
206 |
tagaaacaagtggaaaaacgatgtgatgtcgattaaccatgcaaagtttggaaagtgccattgaaaacgattgtgtcgatggagtaatgacgtgagataa |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9581437 |
tagaaacaagtggaaaaacgatgtgatgtcgattaaccatgcaaagtttggaaagtgccattgaaaatgattgtgtcgatggagtaatgacgtgagataa |
9581536 |
T |
|
| Q |
306 |
accttgcgaagtttggaattaggtcaagtaatttaatttaaaaccaaacatgttttcagtttattaccttattagcttttttaattaataatttaaagtc |
405 |
Q |
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| T |
9581537 |
accttgcgaagtttggaa---ggt-aagtaatttaatttaaaaccaaacatgttttcagtttattaccttattagcttttttaattaataatttaaagtc |
9581632 |
T |
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| Q |
406 |
tgtcttacaccttattgtttctaattgtttgaatgtacgttcacattcctcatctatgtctactagatttcatgagaatggttaagtatattttcttttt |
505 |
Q |
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| T |
9581633 |
tgtcttacaccttattgtttctaattgtttgaatgtacgttcatattcctcatctatgtctactagatttcatgagaatggttaagtatattttcttttt |
9581732 |
T |
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| Q |
506 |
gttgatgattgagtttttggatgctaaaatacgtgattttataatgtatttcaacatcttagttgattctccttct |
581 |
Q |
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| T |
9581733 |
gttgatgattgagtttttggatgctaaaatacgtgattttataatgtatttcaacatcttagttgattctccttct |
9581808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 429 - 523
Target Start/End: Complemental strand, 7708141 - 7708047
Alignment:
| Q |
429 |
attgtttgaatgtacgttcacattcctcatctatgtctactagatttcatgagaatggttaagtatattttctttttgttgatgattgagttttt |
523 |
Q |
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| T |
7708141 |
attgtttgagtgtatgatcacattccttatctatgtcgaccatctttcttgagaatagttaaatatgttttcattttgttgatgattgacttttt |
7708047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 5539568 - 5539503
Alignment:
| Q |
66 |
attgtcttttgtaggaagtctgtttcttagaaatcgccacacaaatagagacacctttgacggaat |
131 |
Q |
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| T |
5539568 |
attgtctttagtaggaagtctgttgcgtaggaggcgccacacaaacagagacacctttgaaggaat |
5539503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 37983979 - 37984038
Alignment:
| Q |
66 |
attgtcttttgtaggaagtctgtttcttagaaatcgccacacaaatagagacacctttga |
125 |
Q |
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| T |
37983979 |
attgtctttagtaggaagtcagtttcgaagtaggcgccacacaaatagagacacctttga |
37984038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 23817 - 23750
Alignment:
| Q |
64 |
agattgtcttttgtaggaagtctgtttcttagaaatcgccacacaaatagagacacctttgacggaat |
131 |
Q |
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| T |
23817 |
agattgtcttttgtaggaagcctgttgcgaaggaggcgccacacaaatagagaaacctttgaaggaat |
23750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 10491044 - 10490977
Alignment:
| Q |
66 |
attgtcttttgtaggaagtctgtttcttagaaatcgccacacaaatagagacacctttgacggaatga |
133 |
Q |
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| T |
10491044 |
attgtccttagtaggaagtctgtttctaagtaaatgccacacaaacagaggcacctttgacagaatga |
10490977 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 34424033 - 34423972
Alignment:
| Q |
70 |
tcttttgtaggaagtctgtttcttagaaatcgccacacaaatagagacacctttgacggaat |
131 |
Q |
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| T |
34424033 |
tcttttgtgggaagtctgttgcgaagaagacgccacacaaacagagacacctttgaaggaat |
34423972 |
T |
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